Information for 5-KYCTTTTGTTDTT (Motif 4)

C A G T A G T C A G T C A C G T C G A T A C G T A C G T A C T G A C G T C G A T C T G A C G A T A C G T
Reverse Opposite:
T G C A G C T A G A C T G C T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G T C A G G T C A
p-value:1e-29
log p-value:-6.881e+01
Information Content per bp:1.746
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif8.15%
Number of Background Sequences with motif529.5
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets48.8 +/- 23.5bp
Average Position of motif in Background49.9 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:KYCTTTTGTTDTT---
-NCNTTTGTTATTTNN
 C A G T A G T C A G T C A C G T C G A T A C G T A C G T A C T G A C G T C G A T C T G A C G A T A C G T A C G T A C G T A C G T
A C G T A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--KYCTTTTGTTDTT--
TNNTCCTTTGTTCTNNT
 A C G T A C G T C A G T A G T C A G T C A C G T C G A T A C G T A C G T A C T G A C G T C G A T C T G A C G A T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.78
Offset:2
Orientation:forward strand
Alignment:KYCTTTTGTTDTT
--CCTTTGTTTT-
 C A G T A G T C A G T C A C G T C G A T A C G T A C G T A C T G A C G T C G A T C T G A C G A T A C G T
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--KYCTTTTGTTDTT--
NNNTCCTTTGTTCTNNN
 A C G T A C G T C A G T A G T C A G T C A C G T C G A T A C G T A C G T A C T G A C G T C G A T C T G A C G A T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.77
Offset:2
Orientation:forward strand
Alignment:KYCTTTTGTTDTT
--CCWTTGTY---
 C A G T A G T C A G T C A C G T C G A T A C G T A C G T A C T G A C G T C G A T C T G A C G A T A C G T
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.75
Offset:2
Orientation:forward strand
Alignment:KYCTTTTGTTDTT
--CCATTGTTNY-
 C A G T A G T C A G T C A C G T C G A T A C G T A C G T A C T G A C G T C G A T C T G A C G A T A C G T
A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:KYCTTTTGTTDTT
-NCCATTGTTC--
 C A G T A G T C A G T C A C G T C G A T A C G T A C G T A C T G A C G T C G A T C T G A C G A T A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.72
Offset:2
Orientation:forward strand
Alignment:KYCTTTTGTTDTT
--CCTTTGTT---
 C A G T A G T C A G T C A C G T C G A T A C G T A C G T A C T G A C G T C G A T C T G A C G A T A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:9
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:KYCTTTTGTTDTT----
-NNTTTTGTTTTGATNT
 C A G T A G T C A G T C A C G T C G A T A C G T A C G T A C T G A C G T C G A T C T G A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

PB0073.1_Sox7_1/Jaspar

Match Rank:10
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----KYCTTTTGTTDTT----
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T A C G T A C G T A C G T C A G T A G T C A G T C A C G T C G A T A C G T A C G T A C T G A C G T C G A T C T G A C G A T A C G T A C G T A C G T A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T