Information for 21-GTWGWRTARCAAT (Motif 28)

T A C G A C G T C G A T C T A G C G T A C T A G C G A T C G T A C T G A A G T C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G A G C T A C G T C G T A A G T C C G A T A G T C C G T A G T C A A G T C
p-value:1e-8
log p-value:-2.005e+01
Information Content per bp:1.792
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif32.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets47.1 +/- 22.2bp
Average Position of motif in Background47.8 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox5/MA0087.1/Jaspar

Match Rank:1
Score:0.78
Offset:6
Orientation:reverse strand
Alignment:GTWGWRTARCAAT
------NAACAAT
 T A C G A C G T C G A T C T A G C G T A C T A G C G A T C G T A C T G A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.73
Offset:7
Orientation:reverse strand
Alignment:GTWGWRTARCAAT
-------AACAAT
 T A C G A C G T C G A T C T A G C G T A C T A G C G A T C G T A C T G A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GTWGWRTARCAAT--
-NTTNAGAACAATTA
 T A C G A C G T C G A T C T A G C G T A C T A G C G A T C G T A C T G A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0073.1_Sox7_1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GTWGWRTARCAAT---------
AATAAAGAACAATAGAATTTCA
 T A C G A C G T C G A T C T A G C G T A C T A G C G A T C G T A C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GTWGWRTARCAAT------
---AATGAACAATGGAATT
 T A C G A C G T C G A T C T A G C G T A C T A G C G A T C G T A C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0065.1_Sox15_1/Jaspar

Match Rank:6
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GTWGWRTARCAAT------
--TAGTGAACAATAGATTT
 T A C G A C G T C G A T C T A G C G T A C T A G C G A T C G T A C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GTWGWRTARCAAT----
-NNTNANAACAATTNNA
 T A C G A C G T C G A T C T A G C G T A C T A G C G A T C G T A C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0074.1_Sox8_1/Jaspar

Match Rank:8
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GTWGWRTARCAAT------
--TNNAGAACAATANATNN
 T A C G A C G T C G A T C T A G C G T A C T A G C G A T C G T A C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GTWGWRTARCAAT-----
--TTAAGAACAATAAATT
 T A C G A C G T C G A T C T A G C G T A C T A G C G A T C G T A C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

SRY/MA0084.1/Jaspar

Match Rank:10
Score:0.71
Offset:4
Orientation:forward strand
Alignment:GTWGWRTARCAAT
----GTAAACAAT
 T A C G A C G T C G A T C T A G C G T A C T A G C G A T C G T A C T G A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T