Information for 13-RCTTWACATABCA (Motif 13)

C T G A A G T C A C G T A C G T G C T A C T G A T G A C C G T A C G A T T C G A A C T G A G T C C G T A
Reverse Opposite:
C G A T A C T G T G A C A G C T C G T A A C G T A C T G G A C T C G A T G T C A C G T A A C T G A G C T
p-value:1e-11
log p-value:-2.608e+01
Information Content per bp:1.739
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.4 +/- 8.3bp
Average Position of motif in Background41.5 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--RCTTWACATABCA
BTVATTWGCATA---
 A C G T A C G T C T G A A G T C A C G T A C G T G C T A C T G A T G A C C G T A C G A T T C G A A C T G A G T C C G T A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RCTTWACATABCA
GCTATAAATAGC-
 C T G A A G T C A C G T A C G T G C T A C T G A T G A C C G T A C G A T T C G A A C T G A G T C C G T A
C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:RCTTWACATABCA
-ATTTGCATA---
 C T G A A G T C A C G T A C G T G C T A C T G A T G A C C G T A C G A T T C G A A C T G A G T C C G T A
A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:RCTTWACATABCA
-ATTTGCATA---
 C T G A A G T C A C G T A C G T G C T A C T G A T G A C C G T A C G A T T C G A A C T G A G T C C G T A
A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RCTTWACATABCA---
-ATTTGCATAACAATG
 C T G A A G T C A C G T A C G T G C T A C T G A T G A C C G T A C G A T T C G A A C T G A G T C C G T A A C G T A C G T A C G T
A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

POU3F1/MA0786.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RCTTWACATABCA
TAATTTGCATAA--
 A C G T C T G A A G T C A C G T A C G T G C T A C T G A T G A C C G T A C G A T T C G A A C T G A G T C C G T A
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:RCTTWACATABCA---
-ATTTGCATAACAAAG
 C T G A A G T C A C G T A C G T G C T A C T G A T G A C C G T A C G A T T C G A A C T G A G T C C G T A A C G T A C G T A C G T
A C G T G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

MEF2D/MA0773.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RCTTWACATABCA
ACTATAAATAGA-
 C T G A A G T C A C G T A C G T G C T A C T G A T G A C C G T A C G A T T C G A A C T G A G T C C G T A
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:RCTTWACATABCA
AATTTGCATANT-
 C T G A A G T C A C G T A C G T G C T A C T G A T G A C C G T A C G A T T C G A A C T G A G T C C G T A
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-RCTTWACATABCA
TAATTTGCATAA--
 A C G T C T G A A G T C A C G T A C G T G C T A C T G A T G A C C G T A C G A T T C G A A C T G A G T C C G T A
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A A C G T A C G T