Information for 11-CHTTACCATTTGA (Motif 11)

A G T C G C A T A C G T C G A T C G T A T G A C A G T C G T C A A C G T A C G T A C G T A T C G C G T A
Reverse Opposite:
C G A T T A G C G T C A G T C A G T C A A C G T A C T G A C T G C G A T C G T A C G T A C G T A C T A G
p-value:1e-12
log p-value:-2.776e+01
Information Content per bp:1.737
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif74.4
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets35.0 +/- 20.1bp
Average Position of motif in Background54.1 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarg/MA0859.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CHTTACCATTTGA----
-TTGACCTTTTGACCTT
 A G T C G C A T A C G T C G A T C G T A T G A C A G T C G T C A A C G T A C G T A C G T A T C G C G T A A C G T A C G T A C G T A C G T
A C G T C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

Rarb/MA0857.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CHTTACCATTTGA-----
--TGACCTTTTGACCTTT
 A G T C G C A T A C G T C G A T C G T A T G A C A G T C G T C A A C G T A C G T A C G T A T C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

RARA/MA0729.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CHTTACCATTTGA----
CATTGACCTTTTGACCTC
 A C G T A G T C G C A T A C G T C G A T C G T A T G A C A G T C G T C A A C G T A C G T A C G T A T C G C G T A A C G T A C G T A C G T A C G T
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CHTTACCATTTGA----
--TGACCTTTTGACCTC
 A G T C G C A T A C G T C G A T C G T A T G A C A G T C G T C A A C G T A C G T A C G T A T C G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CHTTACCATTTGA
BTVATTWGCATA---
 A C G T A C G T A G T C G C A T A C G T C G A T C G T A T G A C A G T C G T C A A C G T A C G T A C G T A T C G C G T A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CHTTACCATTTGA-
--TGACCTTTNCNT
 A G T C G C A T A C G T C G A T C G T A T G A C A G T C G T C A A C G T A C G T A C G T A T C G C G T A A C G T
A C G T A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CHTTACCATTTGA
NNACTTACCTN----
 A C G T A C G T A G T C G C A T A C G T C G A T C G T A T G A C A G T C G T C A A C G T A C G T A C G T A T C G C G T A
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CHTTACCATTTGA-
NNNNTGACCTTTNNNN
 A C G T A C G T A G T C G C A T A C G T C G A T C G T A T G A C A G T C G T C A A C G T A C G T A C G T A T C G C G T A A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

PB0082.1_Tcf3_1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CHTTACCATTTGA------
--NNTTCCTTTGATCTANA
 A G T C G C A T A C G T C G A T C G T A T G A C A G T C G T C A A C G T A C G T A C G T A T C G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CHTTACCATTTGA-----
-ATAACCACTTGAAAATT
 A G T C G C A T A C G T C G A T C G T A T G A C A G T C G T C A A C G T A C G T A C G T A T C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T