Information for 13-CACTGTTCGCCGC (Motif 25)

A G T C G T C A A T G C A C G T A C T G A C G T A C G T G T A C A C T G A G T C A T G C A C T G A G T C
Reverse Opposite:
A C T G A G T C T A C G A C T G A G T C A C T G C G T A C G T A T G A C C G T A A T C G A C G T A C T G
p-value:1e-9
log p-value:-2.236e+01
Information Content per bp:1.923
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.1 +/- 22.4bp
Average Position of motif in Background56.3 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CACTGTTCGCCGC
CCATTGTTYB----
 A C G T A G T C G T C A A T G C A C G T A C T G A C G T A C G T G T A C A C T G A G T C A T G C A C T G A G T C
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CACTGTTCGCCGC
NCCATTGTTC-----
 A C G T A C G T A G T C G T C A A T G C A C G T A C T G A C G T A C G T G T A C A C T G A G T C A T G C A C T G A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CACTGTTCGCCGC
CCWTTGTYYB----
 A C G T A G T C G T C A A T G C A C G T A C T G A C G T A C G T G T A C A C T G A G T C A T G C A C T G A G T C
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CACTGTTCGCCGC
CCATTGTTC-----
 A C G T A G T C G T C A A T G C A C G T A C T G A C G T A C G T G T A C A C T G A G T C A T G C A C T G A G T C
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CACTGTTCGCCGC
--CTGTTCCTGG-
 A G T C G T C A A T G C A C G T A C T G A C G T A C G T G T A C A C T G A G T C A T G C A C T G A G T C
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CACTGTTCGCCGC
--CTGTTTAC---
 A G T C G T C A A T G C A C G T A C T G A C G T A C G T G T A C A C T G A G T C A T G C A C T G A G T C
A C G T A C G T A G T C A C G T A C T G A G C T A C G T A C G T G T C A A G T C A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CACTGTTCGCCGC
NCCATTGTTY-----
 A C G T A C G T A G T C G T C A A T G C A C G T A C T G A C G T A C G T G T A C A C T G A G T C A T G C A C T G A G T C
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:8
Score:0.51
Offset:-8
Orientation:reverse strand
Alignment:--------CACTGTTCGCCGC
NNNNTGAGCACTGTNNG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A A T G C A C G T A C T G A C G T A C G T G T A C A C T G A G T C A T G C A C T G A G T C
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CACTGTTCGCCGC
YCTTTGTTCC----
 A C G T A G T C G T C A A T G C A C G T A C T G A C G T A C G T G T A C A C T G A G T C A T G C A C T G A G T C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CACTGTTCGCCGC
-ATTGTTA-----
 A G T C G T C A A T G C A C G T A C T G A C G T A C G T G T A C A C T G A G T C A T G C A C T G A G T C
A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T