Information for 5-ATTDGCATRAGAA (Motif 7)

C G T A A G C T A G C T C G A T C T A G G T A C G T C A C G A T C T G A C G T A A T C G G T C A C T G A
Reverse Opposite:
A G C T C A G T T A G C C G A T G A C T G C T A C A G T A C T G A G T C G C T A C T G A T C G A C G A T
p-value:1e-17
log p-value:-3.953e+01
Information Content per bp:1.681
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.62%
Number of Background Sequences with motif171.1
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets51.3 +/- 28.7bp
Average Position of motif in Background52.7 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:ATTDGCATRAGAA--
ATTTGCATAACAAAG
 C G T A A G C T A G C T C G A T C T A G G T A C G T C A C G A T C T G A C G T A A T C G G T C A C T G A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.90
Offset:0
Orientation:forward strand
Alignment:ATTDGCATRAGAA--
ATTTGCATAACAATG
 C G T A A G C T A G C T C G A T C T A G G T A C G T C A C G A T C T G A C G T A A T C G G T C A C T G A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:ATTDGCATRAGAA
ATTTGCATAA---
 C G T A A G C T A G C T C G A T C T A G G T A C G T C A C G A T C T G A C G T A A T C G G T C A C T G A
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----ATTDGCATRAGAA
TNTAATTTGCATACNA-
 A C G T A C G T A C G T A C G T C G T A A G C T A G C T C G A T C T A G G T A C G T C A C G A T C T G A C G T A A T C G G T C A C T G A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----ATTDGCATRAGAA
TNTAATTTGCATACNA-
 A C G T A C G T A C G T A C G T C G T A A G C T A G C T C G A T C T A G G T A C G T C A C G A T C T G A C G T A A T C G G T C A C T G A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:6
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--ATTDGCATRAGAA
TAATTTGCATAA---
 A C G T A C G T C G T A A G C T A G C T C G A T C T A G G T A C G T C A C G A T C T G A C G T A A T C G G T C A C T G A
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:7
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--ATTDGCATRAGAA
TAATTTGCATAA---
 A C G T A C G T C G T A A G C T A G C T C G A T C T A G G T A C G T C A C G A T C T G A C G T A A T C G G T C A C T G A
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:8
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---ATTDGCATRAGAA
TTCATTTGCATAT---
 A C G T A C G T A C G T C G T A A G C T A G C T C G A T C T A G G T A C G T C A C G A T C T G A C G T A A T C G G T C A C T G A
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---ATTDGCATRAGAA
BTVATTWGCATA----
 A C G T A C G T A C G T C G T A A G C T A G C T C G A T C T A G G T A C G T C A C G A T C T G A C G T A A T C G G T C A C T G A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:10
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-ATTDGCATRAGAA
AATTTGCATANT--
 A C G T C G T A A G C T A G C T C G A T C T A G G T A C G T C A C G A T C T G A C G T A A T C G G T C A C T G A
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T A C G T