Information for 5-AACAATGGGA (Motif 5)

T G C A C G T A A G T C C G T A C G T A C G A T C T A G A C T G C T A G T G C A
Reverse Opposite:
A C G T A G T C G T A C G A T C C G T A A C G T A C G T A C T G C G A T A C G T
p-value:1e-19
log p-value:-4.552e+01
Information Content per bp:1.790
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif7.80%
Number of Background Sequences with motif812.6
Percentage of Background Sequences with motif1.70%
Average Position of motif in Targets50.5 +/- 25.8bp
Average Position of motif in Background50.8 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-AACAATGGGA
GAACAATGGN-
 A C G T T G C A C G T A A G T C C G T A C G T A C G A T C T A G A C T G C T A G T G C A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:AACAATGGGA
AACAAAGG--
 T G C A C G T A A G T C C G T A C G T A C G A T C T A G A C T G C T A G T G C A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--AACAATGGGA
VRAACAATGG--
 A C G T A C G T T G C A C G T A A G T C C G T A C G T A C G A T C T A G A C T G C T A G T G C A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-AACAATGGGA
GAACAATGG--
 A C G T T G C A C G T A A G T C C G T A C G T A C G A T C T A G A C T G C T A G T G C A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:AACAATGGGA
RACAAWGG--
 T G C A C G T A A G T C C G T A C G T A C G A T C T A G A C T G C T A G T G C A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-AACAATGGGA
RAACAATGGN-
 A C G T T G C A C G T A A G T C C G T A C G T A C G A T C T A G A C T G C T A G T G C A
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--AACAATGGGA
RNAACAATGG--
 A C G T A C G T T G C A C G T A A G T C C G T A C G T A C G A T C T A G A C T G C T A G T G C A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--AACAATGGGA
VRRACAAWGG--
 A C G T A C G T T G C A C G T A A G T C C G T A C G T A C G A T C T A G A C T G C T A G T G C A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--AACAATGGGA
AAAACAATGG--
 A C G T A C G T T G C A C G T A A G T C C G T A C G T A C G A T C T A G A C T G C T A G T G C A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----AACAATGGGA--
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T T G C A C G T A A G T C C G T A C G T A C G A T C T A G A C T G C T A G T G C A A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A