Information for 20-GTGAATATGC (Motif 40)

A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G C T A C T G A G T C
Reverse Opposite:
A C T G A G T C C T G A A C G T C G T A A C G T A C G T A G T C C G T A A G T C
p-value:1e-4
log p-value:-1.112e+01
Information Content per bp:1.965
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.0 +/- 28.1bp
Average Position of motif in Background80.1 +/- 4.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GTGAATATGC
ATGMATATDC
 A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G C T A C T G A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GTGAATATGC
ATGAATATTC
 A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G C T A C T G A G T C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTGAATATGC-----
ATGAATATTCATGAG
 A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G C T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GTGAATATGC--
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G C T A C T G A G T C A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

FOXB1/MA0845.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GTGAATATGC
TATGTAAATAT--
 A C G T A C G T A C G T A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G C T A C T G A G T C
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------GTGAATATGC
NNTNTCATGAATGT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G C T A C T G A G T C
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTGAATATGC
TATGTAAATAT--
 A C G T A C G T A C G T A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G C T A C T G A G T C
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GTGAATATGC
ATGTAAACADGS
 A C G T A C G T A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G C T A C T G A G T C
C G T A C A G T T C A G C G A T G T C A G T C A C G T A A G T C C G T A C G A T A T C G A T G C

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:9
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GTGAATATGC
NCWRWGTAAACANSV
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G C T A C T G A G T C
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTGAATATGC---
AYATGYATATGCATR
 A C G T A C G T A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G C T A C T G A G T C A C G T A C G T A C G T
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G