Information for 16-CAKGGTAAATACAACA (Motif 30)

A G T C C G T A C A T G A C T G A C T G A C G T C G T A C T G A C G T A G A C T C G T A A G T C G T C A C T G A T A G C C G T A
Reverse Opposite:
C G A T A C T G A G C T A C G T C T A G A C G T C T G A C G A T G A C T C G A T C G T A G T A C A G T C G T A C C G A T C T A G
p-value:1e-9
log p-value:-2.234e+01
Information Content per bp:1.766
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.8 +/- 16.7bp
Average Position of motif in Background57.9 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0053.1_Hoxa6/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAKGGTAAATACAACA-
-AAGGTAATTACCTAAT
 A G T C C G T A C A T G A C T G A C T G A C G T C G T A C T G A C G T A G A C T C G T A A G T C G T C A C T G A T A G C C G T A A C G T
A C G T T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T

PH0049.1_Hoxa2/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAKGGTAAATACAACA-
-AAGGTAATTAGCTCAT
 A G T C C G T A C A T G A C T G A C T G A C G T C G T A C T G A C G T A G A C T C G T A A G T C G T C A C T G A T A G C C G T A A C G T
A C G T C T G A T G C A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A T A C G G A T C G A C T G T A C C G T A C G A T

Hoxb5/MA0904.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAKGGTAAATACAACA-
-ACGGTAATTAGCTCAT
 A G T C C G T A C A T G A C T G A C T G A C G T C G T A C T G A C G T A G A C T C G T A A G T C G T C A C T G A T A G C C G T A A C G T
A C G T T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0060.1_Hoxb5/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAKGGTAAATACAACA-
-ACGGTAATTAGCTCAT
 A G T C C G T A C A T G A C T G A C T G A C G T C G T A C T G A C G T A G A C T C G T A A G T C G T C A C T G A T A G C C G T A A C G T
A C G T T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0052.1_Hoxa5/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAKGGTAAATACAACA-
-ACGGTAATTAGCTCAG
 A G T C C G T A C A T G A C T G A C T G A C G T C G T A C T G A C G T A G A C T C G T A A G T C G T C A C T G A T A G C C G T A A C G T
A C G T T C G A T G A C C T A G A C T G G A C T G T C A G T C A A C G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A C T A G

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAKGGTAAATACAACA
NCWRWGTAAACANSV--
 A C G T A G T C C G T A C A T G A C T G A C T G A C G T C G T A C T G A C G T A G A C T C G T A A G T C G T C A C T G A T A G C C G T A
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G A C G T A C G T

Hoxd3/MA0912.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAKGGTAAATACAACA-
-ANGNTAATTANCNCAN
 A G T C C G T A C A T G A C T G A C T G A C G T C G T A C T G A C G T A G A C T C G T A A G T C G T C A C T G A T A G C C G T A A C G T
A C G T T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0079.1_Hoxd3/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAKGGTAAATACAACA-
-ANGNTAATTANCNCAN
 A G T C C G T A C A T G A C T G A C T G A C G T C G T A C T G A C G T A G A C T C G T A A G T C G T C A C T G A T A G C C G T A A C G T
A C G T T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0072.1_Hoxc8/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAKGGTAAATACAACA-
-ACNNTAATTACNNCAN
 A G T C C G T A C A T G A C T G A C T G A C G T C G T A C T G A C G T A G A C T C G T A A G T C G T C A C T G A T A G C C G T A A C G T
A C G T T G C A G T A C C T A G C A G T G A C T G T C A G C T A C A G T C A G T C T G A G T A C A G T C G A T C G T A C C G T A T G C A

Foxa2/MA0047.2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAKGGTAAATACAACA
NCTAAGTAAACA-----
 A C G T A G T C C G T A C A T G A C T G A C T G A C G T C G T A C T G A C G T A G A C T C G T A A G T C G T C A C T G A T A G C C G T A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T