Information for 3-CCYGCKGGGA (Motif 2)

G T A C G T A C A G C T T C A G A T G C A C T G A C T G C T A G A C T G C T G A
Reverse Opposite:
G A C T T G A C G A T C G T A C T G A C T A C G A G T C T C G A C A T G A C T G
p-value:1e-36
log p-value:-8.514e+01
Information Content per bp:1.613
Number of Target Sequences with motif165.0
Percentage of Target Sequences with motif22.98%
Number of Background Sequences with motif3619.3
Percentage of Background Sequences with motif7.59%
Average Position of motif in Targets50.9 +/- 26.7bp
Average Position of motif in Background49.5 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CCYGCKGGGA
CCTGCTGAGH
 G T A C G T A C A G C T T C A G A T G C A C T G A C T G C T A G A C T G C T G A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----CCYGCKGGGA
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C A G C T T C A G A T G C A C T G A C T G C T A G A C T G C T G A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---CCYGCKGGGA--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T G T A C G T A C A G C T T C A G A T G C A C T G A C T G C T A G A C T G C T G A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---CCYGCKGGGA
CCCCCTGCTGTG-
 A C G T A C G T A C G T G T A C G T A C A G C T T C A G A T G C A C T G A C T G C T A G A C T G C T G A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---CCYGCKGGGA--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T G T A C G T A C A G C T T C A G A T G C A C T G A C T G C T A G A C T G C T G A A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---CCYGCKGGGA--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T G T A C G T A C A G C T T C A G A T G C A C T G A C T G C T A G A C T G C T G A A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CCYGCKGGGA
GACCCCCCGCTGTGC
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C A G C T T C A G A T G C A C T G A C T G C T A G A C T G C T G A
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCYGCKGGGA
GACCCCCCGCTGCGC
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C A G C T T C A G A T G C A C T G A C T G C T A G A C T G C T G A
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCYGCKGGGA
GACCCCCCGCTGTG-
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C A G C T T C A G A T G C A C T G A C T G C T A G A C T G C T G A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCYGCKGGGA---
CCCCCCCGGGGGGGT
 A C G T A C G T G T A C G T A C A G C T T C A G A T G C A C T G A C T G C T A G A C T G C T G A A C G T A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T