Information for 6-AAATTTGCATRAMWAA (Motif 8)

C G T A G T C A T C G A A G C T A G C T C G A T T A C G A G T C C G T A C A G T C T G A C G T A G T C A C G T A C G T A C G T A
Reverse Opposite:
G A C T C G A T C G A T C A G T A C G T G A C T G C T A A C G T A C T G A T G C G C T A T C G A C T G A A C G T A C G T C G A T
p-value:1e-17
log p-value:-3.938e+01
Information Content per bp:1.723
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif18.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets58.0 +/- 17.7bp
Average Position of motif in Background61.7 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:AAATTTGCATRAMWAA-
--ATTTGCATAACAAAG
 C G T A G T C A T C G A A G C T A G C T C G A T T A C G A G T C C G T A C A G T C T G A C G T A G T C A C G T A C G T A C G T A A C G T
A C G T A C G T G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.81
Offset:2
Orientation:forward strand
Alignment:AAATTTGCATRAMWAA-
--ATTTGCATAACAATG
 C G T A G T C A T C G A A G C T A G C T C G A T T A C G A G T C C G T A C A G T C T G A C G T A G T C A C G T A C G T A C G T A A C G T
A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

POU3F3/MA0788.1/Jaspar

Match Rank:3
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:AAATTTGCATRAMWAA
AAATTAGCATAAT---
 C G T A G T C A T C G A A G C T A G C T C G A T T A C G A G T C C G T A C A G T C T G A C G T A G T C A C G T A C G T A C G T A
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:4
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:AAATTTGCATRAMWAA
TAATTTGCATAA----
 C G T A G T C A T C G A A G C T A G C T C G A T T A C G A G T C C G T A C A G T C T G A C G T A G T C A C G T A C G T A C G T A
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.75
Offset:2
Orientation:forward strand
Alignment:AAATTTGCATRAMWAA
--ATTTGCATAA----
 C G T A G T C A T C G A A G C T A G C T C G A T T A C G A G T C C G T A C A G T C T G A C G T A G T C A C G T A C G T A C G T A
A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AAATTTGCATRAMWAA
TAATTTGCATAA----
 C G T A G T C A T C G A A G C T A G C T C G A T T A C G A G T C C G T A C A G T C T G A C G T A G T C A C G T A C G T A C G T A
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AAATTTGCATRAMWAA
TNTAATTTGCATACNA--
 A C G T A C G T C G T A G T C A T C G A A G C T A G C T C G A T T A C G A G T C C G T A C A G T C T G A C G T A G T C A C G T A C G T A C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AAATTTGCATRAMWAA
TNTAATTTGCATACNA--
 A C G T A C G T C G T A G T C A T C G A A G C T A G C T C G A T T A C G A G T C C G T A C A G T C T G A C G T A G T C A C G T A C G T A C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:AAATTTGCATRAMWAA
-AATTTGCATANT---
 C G T A G T C A T C G A A G C T A G C T C G A T T A C G A G T C C G T A C A G T C T G A C G T A G T C A C G T A C G T A C G T A
A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AAATTTGCATRAMWAA
TNTAATTTGCATANNN--
 A C G T A C G T C G T A G T C A T C G A A G C T A G C T C G A T T A C G A G T C C G T A C A G T C T G A C G T A G T C A C G T A C G T A C G T A
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A A C G T A C G T