Information for 4-TGCTAATGGYYTKKCA (Motif 4)

C G A T C T A G A G T C C G A T C T G A C G T A A C G T A C T G T C A G A G T C G A C T A G C T A C G T A C G T A G T C G C T A
Reverse Opposite:
C G A T T C A G T G C A T G C A C T G A C T G A T C A G A G T C G T A C G T C A A C G T A G C T G C T A C T A G A G T C C G T A
p-value:1e-27
log p-value:-6.220e+01
Information Content per bp:1.656
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.50%
Number of Background Sequences with motif65.4
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets40.8 +/- 20.4bp
Average Position of motif in Background57.3 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATGGYYTKKCA
WATGCAAATGAG------
 A C G T A C G T C G A T C T A G A G T C C G A T C T G A C G T A A C G T A C T G T C A G A G T C G A C T A G C T A C G T A C G T A G T C G C T A
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATGGYYTKKCA
TATGCWAATBAV------
 A C G T A C G T C G A T C T A G A G T C C G A T C T G A C G T A A C G T A C T G T C A G A G T C G A C T A G C T A C G T A C G T A G T C G C T A
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TGCTAATGGYYTKKCA
--NTAATKGTTT----
 C G A T C T A G A G T C C G A T C T G A C G T A A C G T A C T G T C A G A G T C G A C T A G C T A C G T A C G T A G T C G C T A
A C G T A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TGCTAATGGYYTKKCA
-GTTAATGGCC-----
 C G A T C T A G A G T C C G A T C T G A C G T A A C G T A C T G T C A G A G T C G A C T A G C T A C G T A C G T A G T C G C T A
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATGGYYTKKCA
TATGCAAAT---------
 A C G T A C G T C G A T C T A G A G T C C G A T C T G A C G T A A C G T A C T G T C A G A G T C G A C T A G C T A C G T A C G T A G T C G C T A
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TGCTAATGGYYTKKCA
TTATGCAAATTA-------
 A C G T A C G T A C G T C G A T C T A G A G T C C G A T C T G A C G T A A C G T A C T G T C A G A G T C G A C T A G C T A C G T A C G T A G T C G C T A
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----TGCTAATGGYYTKKCA
TTGTATGCAAATTAGA-----
 A C G T A C G T A C G T A C G T A C G T C G A T C T A G A G T C C G A T C T G A C G T A A C G T A C T G T C A G A G T C G A C T A G C T A C G T A C G T A G T C G C T A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----TGCTAATGGYYTKKCA
TTGTATGCAAATTAGA-----
 A C G T A C G T A C G T A C G T A C G T C G A T C T A G A G T C C G A T C T G A C G T A A C G T A C T G T C A G A G T C G A C T A G C T A C G T A C G T A G T C G C T A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAATGGYYTKKCA
TTATGCAAAT---------
 A C G T A C G T A C G T C G A T C T A G A G T C C G A T C T G A C G T A A C G T A C T G T C A G A G T C G A C T A G C T A C G T A C G T A G T C G C T A
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:10
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TGCTAATGGYYTKKCA
-NNTAATTANN-----
 C G A T C T A G A G T C C G A T C T G A C G T A A C G T A C T G T C A G A G T C G A C T A G C T A C G T A C G T A G T C G C T A
A C G T A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T A C G T A C G T A C G T A C G T A C G T