Information for 3-CMCRGCGGGA (Motif 3)

T A G C G T A C G T A C C T G A A T C G A G T C C T A G A C T G C T A G C T G A
Reverse Opposite:
G A C T A G T C G T A C G A T C T C A G A T G C G A C T C A T G C A T G A T C G
p-value:1e-33
log p-value:-7.762e+01
Information Content per bp:1.624
Number of Target Sequences with motif132.0
Percentage of Target Sequences with motif17.79%
Number of Background Sequences with motif2485.6
Percentage of Background Sequences with motif5.24%
Average Position of motif in Targets48.7 +/- 26.5bp
Average Position of motif in Background50.2 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-CMCRGCGGGA----
DCHCAGCAGGRGGCC
 A C G T T A G C G T A C G T A C C T G A A T C G A G T C C T A G A C T G C T A G C T G A A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-CMCRGCGGGA
DCTCAGCAGG-
 A C G T T A G C G T A C G T A C C T G A A T C G A G T C C T A G A C T G C T A G C T G A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---CMCRGCGGGA--
GAGCACAGCAGGACA
 A C G T A C G T A C G T T A G C G T A C G T A C C T G A A T C G A G T C C T A G A C T G C T A G C T G A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---CMCRGCGGGA--
CCACACAGCAGGAGA
 A C G T A C G T A C G T T A G C G T A C G T A C C T G A A T C G A G T C C T A G A C T G C T A G C T G A A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CMCRGCGGGA--
CCACACAGCAGGAGA
 A C G T A C G T A C G T T A G C G T A C G T A C C T G A A T C G A G T C C T A G A C T G C T A G C T G A A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CMCRGCGGGA--
CACAGCAGGGGG
 T A G C G T A C G T A C C T G A A T C G A G T C C T A G A C T G C T A G C T G A A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CMCRGCGGGA---
---GGCGGGAARN
 T A G C G T A C G T A C C T G A A T C G A G T C C T A G A C T G C T A G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

E2F4/MA0470.1/Jaspar

Match Rank:8
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CMCRGCGGGA---
--GGGCGGGAAGG
 T A G C G T A C G T A C C T G A A T C G A G T C C T A G A C T G C T A G C T G A A C G T A C G T A C G T
A C G T A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:9
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CMCRGCGGGA-
-CWGGCGGGAA
 T A G C G T A C G T A C C T G A A T C G A G T C C T A G A C T G C T A G C T G A A C G T
A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CMCRGCGGGA----
NCNCAGCGGGGGGTC
 A C G T T A G C G T A C G T A C C T G A A T C G A G T C C T A G A C T G C T A G C T G A A C G T A C G T A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C