Information for 9-GGTGGCAGAC (Motif 12)

A T C G A T C G A C G T A C T G C T A G A T G C C G T A C T A G C G T A A T G C
Reverse Opposite:
A T C G G C A T A G T C A C G T A T C G G A T C A G T C C G T A A T G C T A G C
p-value:1e-15
log p-value:-3.505e+01
Information Content per bp:1.856
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.23%
Number of Background Sequences with motif163.4
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets56.1 +/- 23.9bp
Average Position of motif in Background48.8 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCAGAC-
AGGTGHCAGACA
 A C G T A T C G A T C G A C G T A C T G C T A G A T G C C G T A C T A G C G T A A T G C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGAC--
AGGTGNCAGACAG
 A C G T A T C G A T C G A C G T A C T G C T A G A T G C C G T A C T A G C G T A A T G C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGAC
VBTGWCAGCB
 A T C G A T C G A C G T A C T G C T A G A T G C C G T A C T A G C G T A A T G C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GGTGGCAGAC----
----CCAGACRSVB
 A T C G A T C G A C G T A C T G C T A G A T G C C G T A C T A G C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGAC
GGTTGGCAT--
 A C G T A T C G A T C G A C G T A C T G C T A G A T G C C G T A C T A G C G T A A T G C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCAGAC
AGGTGTCA---
 A C G T A T C G A T C G A C G T A C T G C T A G A T G C C G T A C T A G C G T A A T G C
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GGTGGCAGAC--
----CCAGACAG
 A T C G A T C G A C G T A C T G C T A G A T G C C G T A C T A G C G T A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGAC
CTTGGCAA--
 A T C G A T C G A C G T A C T G C T A G A T G C C G T A C T A G C G T A A T G C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GGTGGCAGAC--
----BCAGACWA
 A T C G A T C G A C G T A C T G C T A G A T G C C G T A C T A G C G T A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAGAC-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A T C G A T C G A C G T A C T G C T A G A T G C C G T A C T A G C G T A A T G C A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T