Information for 1-AGGTGTKAAH (Motif 1)

C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A T C G A G C A T
Reverse Opposite:
C G T A A G C T A G C T T G A C C T G A A G T C T C G A A T G C A G T C G A C T
p-value:1e-138
log p-value:-3.182e+02
Information Content per bp:1.566
Number of Target Sequences with motif288.0
Percentage of Target Sequences with motif38.81%
Number of Background Sequences with motif3171.8
Percentage of Background Sequences with motif6.69%
Average Position of motif in Targets52.4 +/- 21.6bp
Average Position of motif in Background50.4 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:AGGTGTKAAH
AGGTGTTAAT
 C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A T C G A G C A T
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

TBX2/MA0688.1/Jaspar

Match Rank:2
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-AGGTGTKAAH
AAGGTGTGAAA
 A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A T C G A G C A T
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-AGGTGTKAAH
AAGGTGTKAA-
 A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A T C G A G C A T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:4
Score:0.94
Offset:0
Orientation:forward strand
Alignment:AGGTGTKAAH
AGGTGTGAAM
 C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A T C G A G C A T
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

TBR1/MA0802.1/Jaspar

Match Rank:5
Score:0.93
Offset:0
Orientation:forward strand
Alignment:AGGTGTKAAH
AGGTGTGAAA
 C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A T C G A G C A T
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

TBX4/MA0806.1/Jaspar

Match Rank:6
Score:0.92
Offset:0
Orientation:forward strand
Alignment:AGGTGTKAAH
AGGTGTGA--
 C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A T C G A G C A T
C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:7
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-AGGTGTKAAH--
AAGGTGTGAAAAT
 A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A T C G A G C A T A C G T A C G T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.91
Offset:0
Orientation:forward strand
Alignment:AGGTGTKAAH
AGGTGTCA--
 C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A T C G A G C A T
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T

TBX21/MA0690.1/Jaspar

Match Rank:9
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-AGGTGTKAAH
AAGGTGTGAA-
 A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A T C G A G C A T
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T

MGA/MA0801.1/Jaspar

Match Rank:10
Score:0.90
Offset:0
Orientation:forward strand
Alignment:AGGTGTKAAH
AGGTGTGA--
 C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A T C G A G C A T
C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T