Information for 7-AAAAACAGTC (Motif 13)

C T G A C G T A C T G A C G T A C G T A T A G C C G T A C T A G A C G T T A G C
Reverse Opposite:
A T C G T G C A G A T C A C G T A T C G A C G T C G A T A G C T A C G T A G C T
p-value:1e-9
log p-value:-2.097e+01
Information Content per bp:1.824
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.73%
Number of Background Sequences with motif262.5
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets55.9 +/- 29.8bp
Average Position of motif in Background48.3 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxd3/MA0041.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AAAAACAGTC
AAACAAACATTC
 A C G T A C G T C T G A C G T A C T G A C G T A C G T A T A G C C G T A C T A G A C G T T A G C
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

Foxq1/MA0040.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AAAAACAGTC
AATAAACAATN
 A C G T C T G A C G T A C T G A C G T A C G T A T A G C C G T A C T A G A C G T T A G C
G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

MEF2C/MA0497.1/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AAAAACAGTC
ATGCTAAAAATAGAA
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A C T G A C G T A C G T A T A G C C G T A C T A G A C G T T A G C
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

PB0141.1_Isgf3g_2/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAAAACAGTC---
GCAAAACATTACTA
 A C G T C T G A C G T A C T G A C G T A C G T A T A G C C G T A C T A G A C G T T A G C A C G T A C G T A C G T
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAAAACAGTC
DCYAAAAATAGM-
 A C G T A C G T A C G T C T G A C G T A C T G A C G T A C G T A T A G C C G T A C T A G A C G T T A G C
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AAAAACAGTC
--NAACAAT-
 C T G A C G T A C T G A C G T A C G T A T A G C C G T A C T A G A C G T T A G C
A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAAAACAGTC
AAATAAACA---
 A C G T A C G T C T G A C G T A C T G A C G T A C G T A T A G C C G T A C T A G A C G T T A G C
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:8
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AAAAACAGTC-
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A C T G A C G T A C G T A T A G C C G T A C T A G A C G T T A G C A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AAAAACAGTC
GCTAAAAATAGC-
 A C G T A C G T A C G T C T G A C G T A C T G A C G T A C G T A T A G C C G T A C T A G A C G T T A G C
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AAAAACAGTC
WWATRTAAACAN--
 A C G T A C G T A C G T A C G T C T G A C G T A C T G A C G T A C G T A T A G C C G T A C T A G A C G T T A G C
G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A A C G T A C G T