Information for 6-GGTSAGASGGMAY (Motif 9)

A C T G A C T G A C G T A T G C C G T A C T A G C G T A A T C G A T C G A T C G T G A C G C T A A G T C
Reverse Opposite:
C T A G C A G T A C T G A T G C A T G C A T G C G A C T A G T C A C G T A T C G C G T A A G T C A G T C
p-value:1e-12
log p-value:-2.895e+01
Information Content per bp:1.850
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif47.1
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets43.3 +/- 27.1bp
Average Position of motif in Background51.1 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2C2/MA0504.1/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GGTSAGASGGMAY
AGGGGTCAGAGGTCA-
 A C G T A C G T A C G T A C T G A C T G A C G T A T G C C G T A C T A G C G T A A T C G A T C G A T C G T G A C G C T A A G T C
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GGTSAGASGGMAY
GAGGTCAAAGGTCA-
 A C G T A C G T A C T G A C T G A C G T A T G C C G T A C T A G C G T A A T C G A T C G A T C G T G A C G C T A A G T C
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GGTSAGASGGMAY
GTAGGGCAAAGGTCA-
 A C G T A C G T A C G T A C T G A C T G A C G T A T G C C G T A C T A G C G T A A T C G A T C G A T C G T G A C G C T A A G T C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGTSAGASGGMAY
TAGGGCAAAGGTCA-
 A C G T A C G T A C T G A C T G A C G T A T G C C G T A C T A G C G T A A T C G A T C G A T C G T G A C G C T A A G T C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGTSAGASGGMAY
TGGGGCAAAGGTCA-
 A C G T A C G T A C T G A C T G A C G T A T G C C G T A C T A G C G T A A T C G A T C G A T C G T G A C G C T A A G T C
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGTSAGASGGMAY
GAGGTCAAAGGTCA-
 A C G T A C G T A C T G A C T G A C G T A T G C C G T A C T A G C G T A A T C G A T C G A T C G T G A C G C T A A G T C
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGTSAGASGGMAY
GGGGTCAAAGGTCA-
 A C G T A C G T A C T G A C T G A C G T A T G C C G T A C T A G C G T A A T C G A T C G A T C G T G A C G C T A A G T C
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T

RXRB/MA0855.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGTSAGASGGMAY
GGGGTCAAAGGTCA-
 A C G T A C G T A C T G A C T G A C G T A T G C C G T A C T A G C G T A A T C G A T C G A T C G T G A C G C T A A G T C
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T

RXRG/MA0856.1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGTSAGASGGMAY
GGGGTCAAAGGTCA-
 A C G T A C G T A C T G A C T G A C G T A T G C C G T A C T A G C G T A A T C G A T C G A T C G T G A C G C T A A G T C
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGTSAGASGGMAY
CAAAGGTCAAGGG----
 A C G T A C G T A C G T A C G T A C T G A C T G A C G T A T G C C G T A C T A G C G T A A T C G A T C G A T C G T G A C G C T A A G T C
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T A C G T