Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-16 | -3.842e+01 | 0.0000 | 102.0 | 12.11% | 33.2 | 4.80% | motif file (matrix) |
svg |
2 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-15 | -3.550e+01 | 0.0000 | 28.0 | 3.33% | 3.8 | 0.56% | motif file (matrix) |
svg |
3 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-13 | -2.994e+01 | 0.0000 | 106.0 | 12.59% | 40.2 | 5.81% | motif file (matrix) |
svg |
4 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-12 | -2.783e+01 | 0.0000 | 44.0 | 5.23% | 10.3 | 1.49% | motif file (matrix) |
svg |
5 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-11 | -2.680e+01 | 0.0000 | 63.0 | 7.48% | 19.4 | 2.80% | motif file (matrix) |
svg |
6 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-10 | -2.490e+01 | 0.0000 | 19.0 | 2.26% | 2.2 | 0.32% | motif file (matrix) |
svg |
7 |
| BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-10 | -2.486e+01 | 0.0000 | 55.0 | 6.53% | 16.9 | 2.43% | motif file (matrix) |
svg |
8 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-10 | -2.470e+01 | 0.0000 | 61.0 | 7.24% | 19.4 | 2.80% | motif file (matrix) |
svg |
9 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-10 | -2.439e+01 | 0.0000 | 39.0 | 4.63% | 9.5 | 1.38% | motif file (matrix) |
svg |
10 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-8 | -1.960e+01 | 0.0000 | 48.0 | 5.70% | 15.8 | 2.29% | motif file (matrix) |
svg |
11 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-7 | -1.669e+01 | 0.0000 | 47.0 | 5.58% | 16.6 | 2.40% | motif file (matrix) |
svg |
12 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-7 | -1.651e+01 | 0.0000 | 11.0 | 1.31% | 0.4 | 0.05% | motif file (matrix) |
svg |
13 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-6 | -1.517e+01 | 0.0000 | 80.0 | 9.50% | 36.3 | 5.24% | motif file (matrix) |
svg |
14 |
| MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer | 1e-6 | -1.467e+01 | 0.0000 | 22.0 | 2.61% | 5.3 | 0.77% | motif file (matrix) |
svg |
15 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.466e+01 | 0.0000 | 41.0 | 4.87% | 14.7 | 2.13% | motif file (matrix) |
svg |
16 |
| HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-6 | -1.428e+01 | 0.0000 | 10.0 | 1.19% | 1.6 | 0.23% | motif file (matrix) |
svg |
17 |
| MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-5 | -1.345e+01 | 0.0000 | 16.0 | 1.90% | 3.8 | 0.55% | motif file (matrix) |
svg |
18 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-5 | -1.330e+01 | 0.0000 | 13.0 | 1.54% | 2.4 | 0.35% | motif file (matrix) |
svg |
19 |
| YY1(Zf)/Promoter/Homer | 1e-5 | -1.216e+01 | 0.0001 | 9.0 | 1.07% | 0.6 | 0.09% | motif file (matrix) |
svg |
20 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-4 | -1.124e+01 | 0.0002 | 17.0 | 2.02% | 5.0 | 0.72% | motif file (matrix) |
svg |
21 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-4 | -1.097e+01 | 0.0003 | 35.0 | 4.16% | 13.7 | 1.97% | motif file (matrix) |
svg |
22 |
| AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer | 1e-4 | -1.096e+01 | 0.0003 | 54.0 | 6.41% | 24.1 | 3.47% | motif file (matrix) |
svg |
23 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-4 | -9.518e+00 | 0.0012 | 22.0 | 2.61% | 7.5 | 1.08% | motif file (matrix) |
svg |
24 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-4 | -9.325e+00 | 0.0014 | 33.0 | 3.92% | 13.1 | 1.90% | motif file (matrix) |
svg |
25 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-3 | -8.734e+00 | 0.0023 | 15.0 | 1.78% | 4.1 | 0.59% | motif file (matrix) |
svg |
26 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-3 | -8.706e+00 | 0.0023 | 25.0 | 2.97% | 9.5 | 1.37% | motif file (matrix) |
svg |
27 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-3 | -8.546e+00 | 0.0026 | 32.0 | 3.80% | 14.0 | 2.02% | motif file (matrix) |
svg |
28 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.224e+00 | 0.0035 | 7.0 | 0.83% | 1.0 | 0.14% | motif file (matrix) |
svg |
29 |
| MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer | 1e-3 | -7.665e+00 | 0.0059 | 70.0 | 8.31% | 38.1 | 5.50% | motif file (matrix) |
svg |
30 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.585e+00 | 0.0062 | 20.0 | 2.38% | 7.2 | 1.04% | motif file (matrix) |
svg |
31 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-3 | -7.098e+00 | 0.0097 | 35.0 | 4.16% | 16.7 | 2.40% | motif file (matrix) |
svg |
32 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-3 | -7.078e+00 | 0.0097 | 30.0 | 3.56% | 13.9 | 2.01% | motif file (matrix) |
svg |
33 |
| PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.009e+00 | 0.0100 | 23.0 | 2.73% | 9.2 | 1.33% | motif file (matrix) |
svg |
34 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -6.861e+00 | 0.0112 | 33.0 | 3.92% | 15.1 | 2.18% | motif file (matrix) |
svg |
35 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-2 | -6.839e+00 | 0.0112 | 21.0 | 2.49% | 8.8 | 1.28% | motif file (matrix) |
svg |
36 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-2 | -6.688e+00 | 0.0126 | 19.0 | 2.26% | 7.1 | 1.03% | motif file (matrix) |
svg |
37 |
| Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-2 | -6.639e+00 | 0.0129 | 26.0 | 3.09% | 11.0 | 1.60% | motif file (matrix) |
svg |
38 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-2 | -6.589e+00 | 0.0132 | 11.0 | 1.31% | 3.5 | 0.51% | motif file (matrix) |
svg |
39 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-2 | -6.565e+00 | 0.0132 | 17.0 | 2.02% | 6.8 | 0.98% | motif file (matrix) |
svg |
40 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-2 | -6.563e+00 | 0.0132 | 82.0 | 9.74% | 48.9 | 7.07% | motif file (matrix) |
svg |
41 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-2 | -6.484e+00 | 0.0136 | 15.0 | 1.78% | 5.2 | 0.76% | motif file (matrix) |
svg |
42 |
| CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.473e+00 | 0.0136 | 13.0 | 1.54% | 4.4 | 0.63% | motif file (matrix) |
svg |
43 |
| E-box(bHLH)/Promoter/Homer | 1e-2 | -6.444e+00 | 0.0136 | 6.0 | 0.71% | 1.9 | 0.28% | motif file (matrix) |
svg |
44 |
| ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -6.444e+00 | 0.0136 | 6.0 | 0.71% | 1.7 | 0.24% | motif file (matrix) |
svg |
45 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-2 | -6.391e+00 | 0.0136 | 29.0 | 3.44% | 13.1 | 1.90% | motif file (matrix) |
svg |
46 |
| E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer | 1e-2 | -6.334e+00 | 0.0140 | 80.0 | 9.50% | 47.5 | 6.86% | motif file (matrix) |
svg |
47 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-2 | -5.759e+00 | 0.0244 | 70.0 | 8.31% | 41.6 | 6.00% | motif file (matrix) |
svg |
48 |
| PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.636e+00 | 0.0265 | 8.0 | 0.95% | 2.4 | 0.34% | motif file (matrix) |
svg |
49 |
| Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer | 1e-2 | -5.636e+00 | 0.0265 | 8.0 | 0.95% | 2.0 | 0.29% | motif file (matrix) |
svg |
50 |
| RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.536e+00 | 0.0287 | 14.0 | 1.66% | 6.0 | 0.86% | motif file (matrix) |
svg |
51 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-2 | -5.445e+00 | 0.0308 | 12.0 | 1.43% | 4.5 | 0.64% | motif file (matrix) |
svg |
52 |
| CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.443e+00 | 0.0308 | 10.0 | 1.19% | 3.2 | 0.46% | motif file (matrix) |
svg |
53 |
| p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-2 | -5.443e+00 | 0.0308 | 10.0 | 1.19% | 3.4 | 0.49% | motif file (matrix) |
svg |
54 |
| E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.990e+00 | 0.0459 | 68.0 | 8.08% | 41.0 | 5.92% | motif file (matrix) |
svg |
55 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-2 | -4.981e+00 | 0.0459 | 45.0 | 5.34% | 25.7 | 3.71% | motif file (matrix) |
svg |
56 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-2 | -4.960e+00 | 0.0459 | 42.0 | 4.99% | 23.4 | 3.38% | motif file (matrix) |
svg |
57 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-2 | -4.951e+00 | 0.0459 | 39.0 | 4.63% | 21.4 | 3.09% | motif file (matrix) |
svg |
58 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-2 | -4.811e+00 | 0.0459 | 5.0 | 0.59% | 1.9 | 0.28% | motif file (matrix) |
svg |
59 |
| Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer | 1e-2 | -4.811e+00 | 0.0459 | 5.0 | 0.59% | 1.6 | 0.23% | motif file (matrix) |
svg |
60 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-2 | -4.811e+00 | 0.0459 | 5.0 | 0.59% | 0.0 | 0.00% | motif file (matrix) |
svg |
61 |
| MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.811e+00 | 0.0459 | 5.0 | 0.59% | 0.0 | 0.00% | motif file (matrix) |
svg |
62 |
| p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer | 1e-2 | -4.811e+00 | 0.0459 | 5.0 | 0.59% | 0.0 | 0.00% | motif file (matrix) |
svg |
63 |
| p53(p53)/Saos-p53-ChIP-Seq/Homer | 1e-2 | -4.811e+00 | 0.0459 | 5.0 | 0.59% | 0.0 | 0.00% | motif file (matrix) |
svg |
64 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-2 | -4.811e+00 | 0.0459 | 5.0 | 0.59% | 0.0 | 0.00% | motif file (matrix) |
svg |
65 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -4.811e+00 | 0.0459 | 5.0 | 0.59% | 1.1 | 0.15% | motif file (matrix) |
svg |
66 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-2 | -4.772e+00 | 0.0467 | 20.0 | 2.38% | 9.6 | 1.38% | motif file (matrix) |
svg |
67 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-2 | -4.616e+00 | 0.0537 | 23.0 | 2.73% | 12.0 | 1.73% | motif file (matrix) |
svg |