Information for 6-GCTGCCCTCCAGT (Motif 13)

A T C G A G T C A C G T A C T G A T G C G T A C A G T C A C G T A T G C G A T C G C T A A T C G C G A T
Reverse Opposite:
G C T A A T G C C G A T C T A G T A C G C G T A A C T G A C T G A T C G T A G C C G T A T A C G A T G C
p-value:1e-9
log p-value:-2.101e+01
Information Content per bp:1.785
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif60.4
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets54.8 +/- 27.0bp
Average Position of motif in Background47.9 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCTGCCCTCCAGT
-CTGCCCGCA---
 A T C G A G T C A C G T A C T G A T G C G T A C A G T C A C G T A T G C G A T C G C T A A T C G C G A T
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCTGCCCTCCAGT--
-NTGCCCANNGGTNA
 A T C G A G T C A C G T A C T G A T G C G T A C A G T C A C G T A T G C G A T C G C T A A T C G C G A T A C G T A C G T
A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCTGCCCTCCAGT
-ATGCCCACC---
 A T C G A G T C A C G T A C T G A T G C G T A C A G T C A C G T A T G C G A T C G C T A A T C G C G A T
A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCTGCCCTCCAGT
--TGACCTYA---
 A T C G A G T C A C G T A C T G A T G C G T A C A G T C A C G T A T G C G A T C G C T A A T C G C G A T
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCTGCCCTCCAGT--------
--TGACCTAAAGTAACCTCTG
 A T C G A G T C A C G T A C T G A T G C G T A C A G T C A C G T A T G C G A T C G C T A A T C G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

E2F6/MA0471.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTGCCCTCCAGT
NCTTCCCGCCC--
 A T C G A G T C A C G T A C T G A T G C G T A C A G T C A C G T A T G C G A T C G C T A A T C G C G A T
A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCTGCCCTCCAGT
--TGACCYCT---
 A T C G A G T C A C G T A C T G A T G C G T A C A G T C A C G T A T G C G A T C G C T A A T C G C G A T
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCTGCCCTCCAGT-----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A T C G A G T C A C G T A C T G A T G C G T A C A G T C A C G T A T G C G A T C G C T A A T C G C G A T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCTGCCCTCCAGT
--TTCCCGCCWG-
 A T C G A G T C A C G T A C T G A T G C G T A C A G T C A C G T A T G C G A T C G C T A A T C G C G A T
A C G T A C G T A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCTGCCCTCCAGT-----
--TGACCTNTAGTAACCC
 A T C G A G T C A C G T A C T G A T G C G T A C A G T C A C G T A T G C G A T C G C T A A T C G C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C