Information for 5-GAGRGTGGCA (Motif 12)

A T C G C G T A C T A G T C A G A T C G A G C T A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G T G A C A G T C T C G A A T G C A G T C G A T C C G A T A T G C
p-value:1e-9
log p-value:-2.116e+01
Information Content per bp:1.742
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.03%
Number of Background Sequences with motif301.6
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets54.2 +/- 27.1bp
Average Position of motif in Background51.5 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GAGRGTGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T A T C G C G T A C T A G T C A G A T C G A G C T A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GAGRGTGGCA-
--GGTTGGCAT
 A T C G C G T A C T A G T C A G A T C G A G C T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GAGRGTGGCA--
--VGCTGWCAVB
 A T C G C G T A C T A G T C A G A T C G A G C T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GAGRGTGGCA
--ARNTGACA
 A T C G C G T A C T A G T C A G A T C G A G C T A C T G A C T G A G T C C G T A
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

PH0164.1_Six4/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GAGRGTGGCA-----
TNNNNGGTGTCATNTNT
 A C G T A C G T A T C G C G T A C T A G T C A G A T C G A G C T A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GAGRGTGGCA-
----NTGTCAN
 A T C G C G T A C T A G T C A G A T C G A G C T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GAGRGTGGCA
--AGGTGTCA
 A T C G C G T A C T A G T C A G A T C G A G C T A C T G A C T G A G T C C G T A
A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GAGRGTGGCA--
----TTGCCAAG
 A T C G C G T A C T A G T C A G A T C G A G C T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GAGRGTGGCA-
---CCTGTCAA
 A T C G C G T A C T A G T C A G A T C G A G C T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GAGRGTGGCA-
---RHTGWCAR
 A T C G C G T A C T A G T C A G A T C G A G C T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A