Information for 5-GTGGCAGCCGAGG (Motif 11)

A T C G G C A T A C T G A C T G A G T C C T G A A C T G G T A C A T G C A C T G C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C C G A T A G T C T A C G C A T G A G T C G A C T T C A G A G T C T A G C C G T A A T G C
p-value:1e-9
log p-value:-2.127e+01
Information Content per bp:1.794
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif123.3
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets49.3 +/- 23.7bp
Average Position of motif in Background50.5 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GTGGCAGCCGAGG
--CGCAGCTGCG-
 A T C G G C A T A C T G A C T G A G T C C T G A A C T G G T A C A T G C A C T G C G T A A C T G A C T G
A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCAGCCGAGG--
NNNNAGCAGCTGCTGAN
 A C G T A C G T A T C G G C A T A C T G A C T G A G T C C T G A A C T G G T A C A T G C A C T G C G T A A C T G A C T G A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

Myog/MA0500.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GTGGCAGCCGAGG
--GACAGCTGCAG
 A T C G G C A T A C T G A C T G A G T C C T G A A C T G G T A C A T G C A C T G C G T A A C T G A C T G
A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTGGCAGCCGAGG
AGGTGHCAGACA---
 A C G T A C G T A T C G G C A T A C T G A C T G A G T C C T G A A C T G G T A C A T G C A C T G C G T A A C T G A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GTGGCAGCCGAGG
----CAGGTGAGG
 A T C G G C A T A C T G A C T G A G T C C T G A A C T G G T A C A T G C A C T G C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GTGGCAGCCGAGG---
-GGTCANYTGAGGWCA
 A T C G G C A T A C T G A C T G A G T C C T G A A C T G G T A C A T G C A C T G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

Myod1/MA0499.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTGGCAGCCGAGG
NGNGACAGCTGCN-
 A C G T A T C G G C A T A C T G A C T G A G T C C T G A A C T G G T A C A T G C A C T G C G T A A C T G A C T G
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GTGGCAGCCGAGG
---NCAGCTGCTG
 A T C G G C A T A C T G A C T G A G T C C T G A A C T G G T A C A T G C A C T G C G T A A C T G A C T G
A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Tcf12/MA0521.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GTGGCAGCCGAGG
--AACAGCTGCAG
 A T C G G C A T A C T G A C T G A G T C C T G A A C T G G T A C A T G C A C T G C G T A A C T G A C T G
A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GTGGCAGCCGAGG---
-NCGCAGCGGGGGGTC
 A T C G G C A T A C T G A C T G A G T C C T G A A C T G G T A C A T G C A C T G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C