Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-6 | -1.533e+01 | 0.0001 | 23.0 | 2.89% | 382.6 | 0.80% | motif file (matrix) |
svg |
2 |
| HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer | 1e-6 | -1.484e+01 | 0.0001 | 17.0 | 2.14% | 223.4 | 0.47% | motif file (matrix) |
svg |
3 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.229e+01 | 0.0006 | 45.0 | 5.65% | 1296.1 | 2.70% | motif file (matrix) |
svg |
4 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-4 | -1.092e+01 | 0.0016 | 99.0 | 12.44% | 3890.8 | 8.11% | motif file (matrix) |
svg |
5 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-4 | -1.080e+01 | 0.0016 | 49.0 | 6.16% | 1551.9 | 3.24% | motif file (matrix) |
svg |
6 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-4 | -1.063e+01 | 0.0016 | 111.0 | 13.94% | 4520.0 | 9.43% | motif file (matrix) |
svg |
7 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-4 | -9.747e+00 | 0.0030 | 104.0 | 13.07% | 4264.9 | 8.89% | motif file (matrix) |
svg |
8 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-4 | -9.563e+00 | 0.0032 | 63.0 | 7.91% | 2275.1 | 4.74% | motif file (matrix) |
svg |
9 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-3 | -9.156e+00 | 0.0043 | 30.0 | 3.77% | 839.2 | 1.75% | motif file (matrix) |
svg |
10 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.660e+00 | 0.0063 | 51.0 | 6.41% | 1788.2 | 3.73% | motif file (matrix) |
svg |
11 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-3 | -7.743e+00 | 0.0144 | 5.0 | 0.63% | 37.6 | 0.08% | motif file (matrix) |
svg |
12 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-3 | -7.136e+00 | 0.0241 | 74.0 | 9.30% | 3045.4 | 6.35% | motif file (matrix) |
svg |
13 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.783e+00 | 0.0317 | 46.0 | 5.78% | 1707.2 | 3.56% | motif file (matrix) |
svg |
14 |
| HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.561e+00 | 0.0368 | 12.0 | 1.51% | 255.3 | 0.53% | motif file (matrix) |
svg |
15 |
| GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.534e+00 | 0.0368 | 6.0 | 0.75% | 72.7 | 0.15% | motif file (matrix) |
svg |
16 |
| Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-2 | -6.028e+00 | 0.0548 | 9.0 | 1.13% | 169.5 | 0.35% | motif file (matrix) |
svg |
17 |
| ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.932e+00 | 0.0568 | 46.0 | 5.78% | 1785.5 | 3.72% | motif file (matrix) |
svg |
18 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-2 | -5.621e+00 | 0.0732 | 87.0 | 10.93% | 3912.1 | 8.16% | motif file (matrix) |
svg |
19 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-2 | -5.393e+00 | 0.0871 | 124.0 | 15.58% | 5938.6 | 12.38% | motif file (matrix) |
svg |
20 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.370e+00 | 0.0871 | 22.0 | 2.76% | 710.7 | 1.48% | motif file (matrix) |
svg |
21 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-2 | -5.288e+00 | 0.0875 | 10.0 | 1.26% | 225.1 | 0.47% | motif file (matrix) |
svg |
22 |
| ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.177e+00 | 0.0934 | 4.0 | 0.50% | 42.6 | 0.09% | motif file (matrix) |
svg |
23 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.117e+00 | 0.0949 | 208.0 | 26.13% | 10695.4 | 22.30% | motif file (matrix) |
svg |
24 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-2 | -4.925e+00 | 0.1101 | 103.0 | 12.94% | 4881.8 | 10.18% | motif file (matrix) |
svg |
25 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-2 | -4.784e+00 | 0.1217 | 39.0 | 4.90% | 1557.4 | 3.25% | motif file (matrix) |
svg |
26 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -4.714e+00 | 0.1255 | 143.0 | 17.96% | 7123.9 | 14.86% | motif file (matrix) |
svg |
27 |
| Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-2 | -4.666e+00 | 0.1268 | 15.0 | 1.88% | 449.8 | 0.94% | motif file (matrix) |
svg |