Information for 3-RTTTRGATMAWGAAGA (Motif 4)

C T A G C G A T A C G T A C G T C T A G A C T G T C G A A G C T G T A C G T C A C G T A C T A G G T C A G T C A T C A G T G C A
Reverse Opposite:
A C G T A G T C A C G T A C G T A G T C C G A T A C G T A C T G C T G A A G C T A G T C A G T C G T C A T G C A G C T A G A T C
p-value:1e-13
log p-value:-3.114e+01
Information Content per bp:1.654
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif54.3
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets50.3 +/- 25.8bp
Average Position of motif in Background57.3 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:RTTTRGATMAWGAAGA
AAYTAGGTCA------
 C T A G C G A T A C G T A C G T C T A G A C T G T C G A A G C T G T A C G T C A C G T A C T A G G T C A G T C A T C A G T G C A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:RTTTRGATMAWGAAGA
---NGGATTAN-----
 C T A G C G A T A C G T A C G T C T A G A C T G T C G A A G C T G T A C G T C A C G T A C T A G G T C A G T C A T C A G T G C A
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---RTTTRGATMAWGAAGA
TATAAGTAGGTCAA-----
 A C G T A C G T A C G T C T A G C G A T A C G T A C G T C T A G A C T G T C G A A G C T G T A C G T C A C G T A C T A G G T C A G T C A T C A G T G C A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:RTTTRGATMAWGAAGA
AAACAGACAAAGGAAT
 C T A G C G A T A C G T A C G T C T A G A C T G T C G A A G C T G T A C G T C A C G T A C T A G G T C A G T C A T C A G T G C A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.53
Offset:10
Orientation:reverse strand
Alignment:RTTTRGATMAWGAAGA
----------NGAAGC
 C T A G C G A T A C G T A C G T C T A G A C T G T C G A A G C T G T A C G T C A C G T A C T A G G T C A G T C A T C A G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:RTTTRGATMAWGAAGA
ATCAAGGTCA------
 C T A G C G A T A C G T A C G T C T A G A C T G T C G A A G C T G T A C G T C A C G T A C T A G G T C A G T C A T C A G T G C A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:RTTTRGATMAWGAAGA
----AGGTCA------
 C T A G C G A T A C G T A C G T C T A G A C T G T C G A A G C T G T A C G T C A C G T A C T A G G T C A G T C A T C A G T G C A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:RTTTRGATMAWGAAGA
----AGGTCAAGGTCA
 C T A G C G A T A C G T A C G T C T A G A C T G T C G A A G C T G T A C G T C A C G T A C T A G G T C A G T C A T C A G T G C A
A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:RTTTRGATMAWGAAGA--
--TAAGGTAATAAAATTA
 C T A G C G A T A C G T A C G T C T A G A C T G T C G A A G C T G T A C G T C A C G T A C T A G G T C A G T C A T C A G T G C A A C G T A C G T
A C G T A C G T C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PB0157.1_Rara_2/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--RTTTRGATMAWGAAGA
AGAGCGGGGTCAAGTA--
 A C G T A C G T C T A G C G A T A C G T A C G T C T A G A C T G T C G A A G C T G T A C G T C A C G T A C T A G G T C A G T C A T C A G T G C A
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T A C G T