Information for 1-AACAGTAGGGATA (Motif 2)

G T C A C G T A A T G C C G T A A C T G C G A T C G T A A C T G A C T G A C T G C G T A C G A T C G T A
Reverse Opposite:
A C G T C G T A A C G T A G T C A G T C A G T C C G A T C G T A A G T C A C G T A T C G A C G T A C G T
p-value:1e-14
log p-value:-3.277e+01
Information Content per bp:1.931
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.8 +/- 19.9bp
Average Position of motif in Background92.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0050.1_Osr1_1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AACAGTAGGGATA
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T G T C A C G T A A T G C C G T A A C T G C G A T C G T A A C T G A C T G A C T G C G T A C G A T C G T A
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AACAGTAGGGATA
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T G T C A C G T A A T G C C G T A A C T G C G A T C G T A A C T G A C T G A C T G C G T A C G A T C G T A
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AACAGTAGGGATA
CACAGCAGGGGG-
 G T C A C G T A A T G C C G T A A C T G C G A T C G T A A C T G A C T G A C T G C G T A C G A T C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AACAGTAGGGATA
TAGTGAACAATAGATTT-
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A A T G C C G T A A C T G C G A T C G T A A C T G A C T G A C T G C G T A C G A T C G T A
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AACAGTAGGGATA
DCTCAGCAGG----
 A C G T G T C A C G T A A T G C C G T A A C T G C G A T C G T A A C T G A C T G A C T G C G T A C G A T C G T A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AACAGTAGGGATA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T G T C A C G T A A T G C C G T A A C T G C G A T C G T A A C T G A C T G A C T G C G T A C G A T C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AACAGTAGGGATA
AACAGATGGT---
 G T C A C G T A A T G C C G T A A C T G C G A T C G T A A C T G A C T G A C T G C G T A C G A T C G T A
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:AACAGTAGGGATA----
------AAGGATATNTN
 G T C A C G T A A T G C C G T A A C T G C G A T C G T A A C T G A C T G A C T G C G T A C G A T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AACAGTAGGGATA
GAACAATGG-----
 A C G T G T C A C G T A A T G C C G T A A C T G C G A T C G T A A C T G A C T G A C T G C G T A C G A T C G T A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AACAGTAGGGATA-
----GGAGGGGGAA
 G T C A C G T A A T G C C G T A A C T G C G A T C G T A A C T G A C T G A C T G C G T A C G A T C G T A A C G T
A C G T A C G T A C G T A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A