Information for 5-AMATGYAKCAGTR (Motif 16)

C G T A G T A C C G T A C A G T A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C G T C T G A
Reverse Opposite:
A G C T C G T A A G T C A C G T A C T G G T C A C G A T C T A G A G T C G C T A A C G T A C T G A C G T
p-value:1e-10
log p-value:-2.448e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.7 +/- 26.4bp
Average Position of motif in Background27.7 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AMATGYAKCAGTR
-AATGTATCAAT-
 C G T A G T A C C G T A C A G T A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C G T C T G A
A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----AMATGYAKCAGTR
AAAATACATGTAAAAAT-
 A C G T A C G T A C G T A C G T A C G T C G T A G T A C C G T A C A G T A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C G T C T G A
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AMATGYAKCAGTR
AATATACATGTAAAATT-
 A C G T A C G T A C G T A C G T A C G T C G T A G T A C C G T A C A G T A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C G T C T G A
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AMATGYAKCAGTR
TAAATACATGTAAAATT-
 A C G T A C G T A C G T A C G T A C G T C G T A G T A C C G T A C A G T A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C G T C T G A
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AMATGYAKCAGTR
AAAATACATGTAATACT-
 A C G T A C G T A C G T A C G T A C G T C G T A G T A C C G T A C A G T A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C G T C T G A
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AMATGYAKCAGTR
AATATACATGTAATATA-
 A C G T A C G T A C G T A C G T A C G T C G T A G T A C C G T A C A G T A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C G T C T G A
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T A C G T

PH0085.1_Irx4/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AMATGYAKCAGTR
AATATACATGTAAAACA-
 A C G T A C G T A C G T A C G T A C G T C G T A G T A C C G T A C A G T A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C G T C T G A
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AMATGYAKCAGTR
-ATTGCATCAK--
 C G T A G T A C C G T A C A G T A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C G T C T G A
A C G T T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AMATGYAKCAGTR
-ATTGCATCAT--
 C G T A G T A C C G T A C A G T A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C G T C T G A
A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AMATGYAKCAGTR
GYCATCMATCAT--
 A C G T C G T A G T A C C G T A C A G T A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C G T C T G A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T