Information for 3-CCCTTCTAATTTT (Motif 13)

G T A C G T A C G T A C A G C T C G A T T A G C C G A T G T C A C G T A A C G T C G A T C G A T G A C T
Reverse Opposite:
C T G A C G T A C G T A C G T A A C G T A C G T C G T A A T C G G C T A C T G A A C T G A C T G A C T G
p-value:1e-11
log p-value:-2.650e+01
Information Content per bp:1.738
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif48.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets54.7 +/- 24.5bp
Average Position of motif in Background46.4 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NOTO/MA0710.1/Jaspar

Match Rank:1
Score:0.69
Offset:4
Orientation:forward strand
Alignment:CCCTTCTAATTTT-
----GCTAATTAGC
 G T A C G T A C G T A C A G C T C G A T T A G C C G A T G T C A C G T A A C G T C G A T C G A T G A C T A C G T
A C G T A C G T A C G T A C G T T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

VSX1/MA0725.1/Jaspar

Match Rank:2
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CCCTTCTAATTTT
-----CTAATTAT
 G T A C G T A C G T A C A G C T C G A T T A G C C G A T G T C A C G T A A C G T C G A T C G A T G A C T
A C G T A C G T A C G T A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

VSX2/MA0726.1/Jaspar

Match Rank:3
Score:0.68
Offset:5
Orientation:forward strand
Alignment:CCCTTCTAATTTT
-----CTAATTAG
 G T A C G T A C G T A C A G C T C G A T T A G C C G A T G T C A C G T A A C G T C G A T C G A T G A C T
A C G T A C G T A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:4
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CCCTTCTAATTTT
----NCTAATTA-
 G T A C G T A C G T A C A G C T C G A T T A G C C G A T G T C A C G T A A C G T C G A T C G A T G A C T
A C G T A C G T A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

Dlx1/MA0879.1/Jaspar

Match Rank:5
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CCCTTCTAATTTT-
----CCTAATTATC
 G T A C G T A C G T A C A G C T C G A T T A G C C G A T G T C A C G T A A C G T C G A T C G A T G A C T A C G T
A C G T A C G T A C G T A C G T T G A C T G A C G A C T T G C A G C T A C G A T A C G T G C T A A C G T A T G C

LBX1/MA0618.1/Jaspar

Match Rank:6
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CCCTTCTAATTTT
-----CTAATTAA
 G T A C G T A C G T A C A G C T C G A T T A G C C G A T G T C A C G T A A C G T C G A T C G A T G A C T
A C G T A C G T A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

MEOX1/MA0661.1/Jaspar

Match Rank:7
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CCCTTCTAATTTT-
----GCTAATTAAC
 G T A C G T A C G T A C A G C T C G A T T A G C C G A T G T C A C G T A A C G T C G A T C G A T G A C T A C G T
A C G T A C G T A C G T A C G T T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C

LHX2/MA0700.1/Jaspar

Match Rank:8
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CCCTTCTAATTTT-
----ACTAATTAAC
 G T A C G T A C G T A C A G C T C G A T T A G C C G A T G T C A C G T A A C G T C G A T C G A T G A C T A C G T
A C G T A C G T A C G T A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

ALX3/MA0634.1/Jaspar

Match Rank:9
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CCCTTCTAATTTT-
----TCTAATTAAA
 G T A C G T A C G T A C A G C T C G A T T A G C C G A T G T C A C G T A A C G T C G A T C G A T G A C T A C G T
A C G T A C G T A C G T A C G T G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A

VAX1/MA0722.1/Jaspar

Match Rank:10
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CCCTTCTAATTTT
-----CTAATTAC
 G T A C G T A C G T A C A G C T C G A T T A G C C G A T G T C A C G T A A C G T C G A T C G A T G A C T
A C G T A C G T A C G T A C G T A C G T A G T C G A C T G T C A G T C A C G A T C A G T C T G A G A T C