Information for 3-AAGGGCACAA (Motif 13)

C G T A C G T A A C T G A C T G A C T G A G T C C G T A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C G T A C T G A G T C A G T C A G T C A C G T C G A T
p-value:1e-9
log p-value:-2.126e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.4 +/- 23.0bp
Average Position of motif in Background32.2 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----AAGGGCACAA--
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A A G T C C G T A C G T A A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AAGGGCACAA
AAGGTCAC--
 C G T A C G T A A C T G A C T G A C T G A G T C C G T A A G T C C G T A C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AAGGGCACAA
TCAAGGTCAN--
 A C G T A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A A G T C C G T A C G T A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AAGGGCACAA
CAAGGHCANV-
 A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A A G T C C G T A C G T A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAGGGCACAA
CAAAGGTCAG--
 A C G T A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A A G T C C G T A C G T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AAGGGCACAA
NGTGGGCAT--
 A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A A G T C C G T A C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAGGGCACAA
TRAGGTCA---
 A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A A G T C C G T A C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAGGGCACAA
TCAAGGTCAT--
 A C G T A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A A G T C C G T A C G T A
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AAGGGCACAA
BTCAAGGTCA---
 A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A A G T C C G T A C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AAGGGCACAA---
-RGGGCACTAACY
 C G T A C G T A A C T G A C T G A C T G A G T C C G T A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T