Information for 19-GGGCTAGCCA (Motif 27)

T C A G C A T G A T C G A G T C A G C T C G T A C A T G G T A C A G T C G C T A
Reverse Opposite:
C G A T C T A G A C T G G T A C C G A T T C G A C T A G A T G C G T A C A G T C
p-value:1e-12
log p-value:-2.904e+01
Information Content per bp:1.696
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif5.28%
Number of Background Sequences with motif21.9
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets46.7 +/- 25.2bp
Average Position of motif in Background51.8 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GGGCTAGCCA-
-----TGCCAA
 T C A G C A T G A T C G A G T C A G C T C G T A C A T G G T A C A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGGCTAGCCA-
AGGTGNCAGACAG
 A C G T A C G T T C A G C A T G A T C G A G T C A G C T C G T A C A T G G T A C A G T C G C T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GGGCTAGCCA--
---CGTGCCAAG
 T C A G C A T G A T C G A G T C A G C T C G T A C A T G G T A C A G T C G C T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGGCTAGCCA-
---BCAGACWA
 T C A G C A T G A T C G A G T C A G C T C G T A C A T G G T A C A G T C G C T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGGCTAGCCA
AGGTGHCAGACA
 A C G T A C G T T C A G C A T G A T C G A G T C A G C T C G T A C A T G G T A C A G T C G C T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGGCTAGCCA----
--ACTAGCCAATCA
 T C A G C A T G A T C G A G T C A G C T C G T A C A T G G T A C A G T C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

SMAD3/MA0795.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGGCTAGCCA
CGTCTAGACA
 T C A G C A T G A T C G A G T C A G C T C G T A C A T G G T A C A G T C G C T A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GGGCTAGCCA-
---CTTGGCAA
 T C A G C A T G A T C G A G T C A G C T C G T A C A T G G T A C A G T C G C T A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GGGCTAGCCA
----CAGCC-
 T C A G C A T G A T C G A G T C A G C T C G T A C A T G G T A C A G T C G C T A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGGCTAGCCA---
---GGTGCCAAGT
 T C A G C A T G A T C G A G T C A G C T C G T A C A T G G T A C A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T