Information for 1-ATGAAGAACT (Motif 3)

G T C A C G A T A T C G C T G A G T C A C T A G C G T A C G T A A G T C A G C T
Reverse Opposite:
T C G A T C A G C G A T A C G T G A T C A C G T A G C T A T G C C G T A A C G T
p-value:1e-10
log p-value:-2.392e+01
Information Content per bp:1.733
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif16.22%
Number of Background Sequences with motif543.2
Percentage of Background Sequences with motif1.11%
Average Position of motif in Targets52.8 +/- 25.6bp
Average Position of motif in Background51.2 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ATGAAGAACT
ATGAATATTC
 G T C A C G A T A T C G C T G A G T C A C T A G C G T A C G T A A G T C A G C T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

NFAT5/MA0606.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ATGAAGAACT
NATGGAAAAN-
 A C G T G T C A C G A T A T C G C T G A G T C A C T A G C G T A C G T A A G T C A G C T
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATGAAGAACT--
TTAAGAGGAAGTTA
 A C G T A C G T G T C A C G A T A T C G C T G A G T C A C T A G C G T A C G T A A G T C A G C T A C G T A C G T
A G C T C G A T C G T A C G T A T C A G T C G A C T A G A C T G C G T A C G T A T A C G G A C T C G A T G T A C

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ATGAAGAACT-
AAAGRGGAAGTG
 A C G T G T C A C G A T A T C G C T G A G T C A C T A G C G T A C G T A A G T C A G C T A C G T
C G T A C T G A C G T A C T A G T C G A C T A G A C T G C G T A C G T A T A C G A G C T A T C G

NFATC2/MA0152.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATGAAGAACT
-TGGAAAA--
 G T C A C G A T A T C G C T G A G T C A C T A G C G T A C G T A A G T C A G C T
A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATGAAGAACT
ATGMATATDC
 G T C A C G A T A T C G C T G A G T C A C T A G C G T A C G T A A G T C A G C T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATGAAGAACT--
ATGCATAATTCA
 G T C A C G A T A T C G C T G A G T C A C T A G C G T A C G T A A G T C A G C T A C G T A C G T
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PB0090.1_Zbtb12_1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ATGAAGAACT----
NNGATCTAGAACCTNNN
 A C G T A C G T A C G T G T C A C G A T A T C G C T G A G T C A C T A G C G T A C G T A A G T C A G C T A C G T A C G T A C G T A C G T
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

PB0108.1_Atf1_2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ATGAAGAACT--
GAATGACGAATAAC
 A C G T A C G T G T C A C G A T A T C G C T G A G T C A C T A G C G T A C G T A A G T C A G C T A C G T A C G T
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ATGAAGAACT
AATGGAAAAT-
 A C G T G T C A C G A T A T C G C T G A G T C A C T A G C G T A C G T A A G T C A G C T
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T