Information for 6-GTTGCTCAGGTGA (Motif 5)

A C T G A C G T A C G T A C T G A T G C A G C T A T G C C T G A A C T G C T A G A C G T A C T G G T C A
Reverse Opposite:
A C G T A G T C T C G A A G T C A G T C A G C T A T C G T C G A A T C G G T A C C G T A C G T A A G T C
p-value:1e-18
log p-value:-4.196e+01
Information Content per bp:1.819
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.4 +/- 26.5bp
Average Position of motif in Background50.9 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GTTGCTCAGGTGA-
GTTGCCATGGNAAC
 A C T G A C G T A C G T A C T G A T G C A G C T A T G C C T G A A C T G C T A G A C G T A C T G G T C A A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTCAGGTGA
NNCGTTGCTATGGNN-
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A T G C A G C T A T G C C T G A A C T G C T A G A C G T A C T G G T C A
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------GTTGCTCAGGTGA---
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G A T G C A G C T A T G C C T G A A C T G C T A G A C G T A C T G G T C A A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCTCAGGTGA
CTGTTGCTAGGS---
 A C G T A C G T A C T G A C G T A C G T A C T G A T G C A G C T A T G C C T G A A C T G C T A G A C G T A C T G G T C A
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTCAGGTGA
NCCGTTGCTANGNGN-
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A T G C A G C T A T G C C T G A A C T G C T A G A C G T A C T G G T C A
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTCAGGTGA
NGTTGCCATGGCAA
 A C G T A C T G A C G T A C G T A C T G A T G C A G C T A T G C C T G A A C T G C T A G A C G T A C T G G T C A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GTTGCTCAGGTGA-
----NNCAGGTGNN
 A C T G A C G T A C G T A C T G A T G C A G C T A T G C C T G A A C T G C T A G A C G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

ZEB1/MA0103.2/Jaspar

Match Rank:8
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GTTGCTCAGGTGA--
------CAGGTGAGG
 A C T G A C G T A C G T A C T G A T G C A G C T A T G C C T G A A C T G C T A G A C G T A C T G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GTTGCTCAGGTGA
--TGCCCAGNHW-
 A C T G A C G T A C G T A C T G A T G C A G C T A T G C C T G A A C T G C T A G A C G T A C T G G T C A
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTCAGGTGA
GGTTGCCATGGCAA
 A C G T A C T G A C G T A C G T A C T G A T G C A G C T A T G C C T G A A C T G C T A G A C G T A C T G G T C A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A