Information for 17-CCTGACCTTACWA (Motif 17)

A T G C T A G C A C G T A C T G G T C A A G T C A G T C A C G T C G A T C T G A A T G C C G A T T C G A
Reverse Opposite:
A C G T C G T A A T C G A G C T G C T A C G T A T A C G A C T G A C G T A G T C C G T A A C T G A T C G
p-value:1e-8
log p-value:-1.935e+01
Information Content per bp:1.755
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif11.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.2 +/- 28.8bp
Average Position of motif in Background55.9 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:CCTGACCTTACWA
--TGACCTYA---
 A T G C T A G C A C G T A C T G G T C A A G T C A G T C A C G T C G A T C T G A A T G C C G A T T C G A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CCTGACCTTACWA
-GTGACCTT----
 A T G C T A G C A C G T A C T G G T C A A G T C A G T C A C G T C G A T C T G A A T G C C G A T T C G A
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CCTGACCTTACWA
-NTGACCTTGA--
 A T G C T A G C A C G T A C T G G T C A A G T C A G T C A C G T C G A T C T G A A T G C C G A T T C G A
A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CCTGACCTTACWA
--TGACCTTGAT-
 A T G C T A G C A C G T A C T G G T C A A G T C A G T C A C G T C G A T C T G A A T G C C G A T T C G A
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

CRE(bZIP)/Promoter/Homer

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CCTGACCTTACWA
CGGTGACGTCAC--
 A C G T A T G C T A G C A C G T A C T G G T C A A G T C A G T C A C G T C G A T C T G A A T G C C G A T T C G A
A T G C A T C G T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCTGACCTTACWA
-ATGACCTTGA--
 A T G C T A G C A C G T A C T G G T C A A G T C A G T C A C G T C G A T C T G A A T G C C G A T T C G A
A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CCTGACCTTACWA
--TGACCT-----
 A T G C T A G C A C G T A C T G G T C A A G T C A G T C A C G T C G A T C T G A A T G C C G A T T C G A
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:8
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CCTGACCTTACWA
--TGACGT-----
 A T G C T A G C A C G T A C T G G T C A A G T C A G T C A C G T C G A T C T G A A T G C C G A T T C G A
A C G T A C G T A C G T C A T G C G T A A G T C A C T G G A C T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCTGACCTTACWA
BNTGDCCTTG---
 A T G C T A G C A C G T A C T G G T C A A G T C A G T C A C G T C G A T C T G A A T G C C G A T T C G A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACCTTACWA-
NNNGTGACCTTTGNNN
 A C G T A C G T A T G C T A G C A C G T A C T G G T C A A G T C A G T C A C G T C G A T C T G A A T G C C G A T T C G A A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A