Information for 2-GGCSGCAGACACAGGC (Motif 6)

A T C G A T C G A G T C A T G C A T C G A G T C C G T A A T C G C T G A A T G C T G C A G T A C C G T A A C T G A C T G G T A C
Reverse Opposite:
A C T G A G T C A G T C A C G T A C T G A C G T A T C G A G C T A T G C A C G T A C T G A T G C T A C G A C T G A T G C A T G C
p-value:1e-11
log p-value:-2.628e+01
Information Content per bp:1.778
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif25.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets54.5 +/- 27.3bp
Average Position of motif in Background60.3 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGCSGCAGACACAGGC--
--AAACAGACAAAGGAAT
 A T C G A T C G A G T C A T G C A T C G A G T C C G T A A T C G C T G A A T G C T G C A G T A C C G T A A C T G A C T G G T A C A C G T A C G T
A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GGCSGCAGACACAGGC
-----AAAACAAAGG-
 A T C G A T C G A G T C A T G C A T C G A G T C C G T A A T C G C T G A A T G C T G C A G T A C C G T A A C T G A C T G G T A C
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGCSGCAGACACAGGC
AGCGGCACACACGCAA
 A T C G A T C G A G T C A T G C A T C G A G T C C G T A A T C G C T G A A T G C T G C A G T A C C G T A A C T G A C T G G T A C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:GGCSGCAGACACAGGC
-------AACAAAGG-
 A T C G A T C G A G T C A T G C A T C G A G T C C G T A A T C G C T G A A T G C T G C A G T A C C G T A A C T G A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:5
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GGCSGCAGACACAGGC-
--AAGGKGRCGCAGGCA
 A T C G A T C G A G T C A T G C A T C G A G T C C G T A A T C G C T G A A T G C T G C A G T A C C G T A A C T G A C T G G T A C A C G T
A C G T A C G T T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:GGCSGCAGACACAGGC
----CCAGACRSVB--
 A T C G A T C G A G T C A T G C A T C G A G T C C G T A A T C G C T G A A T G C T G C A G T A C C G T A A C T G A C T G G T A C
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:GGCSGCAGACACAGGC
---------CACAGN-
 A T C G A T C G A G T C A T G C A T C G A G T C C G T A A T C G C T G A A T G C T G C A G T A C C G T A A C T G A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:GGCSGCAGACACAGGC
----CCAGACAG----
 A T C G A T C G A G T C A T G C A T C G A G T C C G T A A T C G C T G A A T G C T G C A G T A C C G T A A C T G A C T G G T A C
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GGCSGCAGACACAGGC--
---CTCACACAATGGCGC
 A T C G A T C G A G T C A T G C A T C G A G T C C G T A A T C G C T G A A T G C T G C A G T A C C G T A A C T G A C T G G T A C A C G T A C G T
A C G T A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GGCSGCAGACACAGGC
CGAAGCACACAAAATA
 A T C G A T C G A G T C A T G C A T C G A G T C C G T A A T C G C T G A A T G C T G C A G T A C C G T A A C T G A C T G G T A C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A