Information for 12-TCGGCCAAGA (Motif 28)

A C G T A G T C A C T G A C T G A G T C A G T C C G T A C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C G T A C T G A C T G A G T C A G T C A C T G C G T A
p-value:1e-6
log p-value:-1.457e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.2 +/- 32.2bp
Average Position of motif in Background29.0 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCGGCCAAGA
--TGCCAA--
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A C G T A A C T G C G T A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCGGCCAAGA
CGTGCCAAG-
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A C G T A A C T G C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCGGCCAAGA
-AGGCCTAG-
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A C G T A A C T G C G T A
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCGGCCAAGA
GGTGCCAAGT
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A C G T A A C T G C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCGGCCAAGA
-TTGCCAAG-
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A C G T A A C T G C G T A
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCGGCCAAGA-
ACTAGCCAATCA
 A C G T A C G T A G T C A C T G A C T G A G T C A G T C C G T A C G T A A C T G C G T A A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TCGGCCAAGA--
--AGCCAATCGG
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A C G T A A C T G C G T A A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TCGGCCAAGA
-CTGCCCGCA
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A C G T A A C T G C G T A
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TCGGCCAAGA--------
--TGCCAAAATAAACANN
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TCGGCCAAGA--
--TGCCCAGNHW
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A C G T A A C T G C G T A A C G T A C G T
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A