Information for 5-TAAGTGTTCT (Motif 6)

A C G T G C T A T G C A T C A G C G A T A C T G A C G T C G A T A T G C A C G T
Reverse Opposite:
C G T A T A C G G C T A C G T A A G T C C G T A A G T C A C G T C G A T T G C A
p-value:1e-11
log p-value:-2.590e+01
Information Content per bp:1.826
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.97%
Number of Background Sequences with motif214.8
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets50.4 +/- 25.7bp
Average Position of motif in Background49.3 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)2.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TAAGTGTTCT
TTAAGTGGN--
 A C G T A C G T G C T A T G C A T C A G C G A T A C T G A C G T C G A T A T G C A C G T
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TAAGTGTTCT----
TAATTGTTCTAAAC
 A C G T G C T A T G C A T C A G C G A T A C T G A C G T C G A T A T G C A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TAAGTGTTCT
TTAAGTGGT--
 A C G T A C G T G C T A T G C A T C A G C G A T A C T G A C G T C G A T A T G C A C G T
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TAAGTGTTCT---
NNTTTATTGTTCTNNN
 A C G T A C G T A C G T A C G T G C T A T G C A T C A G C G A T A C T G A C G T C G A T A T G C A C G T A C G T A C G T A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0063.1_Sox13_1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TAAGTGTTCT---
AANTTATTGTTCTNNA
 A C G T A C G T A C G T A C G T G C T A T G C A T C A G C G A T A C T G A C G T C G A T A T G C A C G T A C G T A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TAAGTGTTCT
TTAAGTGCTT-
 A C G T A C G T G C T A T G C A T C A G C G A T A C T G A C G T C G A T A T G C A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TAAGTGTTCT
TTAAGTGC---
 A C G T A C G T G C T A T G C A T C A G C G A T A C T G A C G T C G A T A T G C A C G T
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TAAGTGTTCT-------
--AGNGTTCTAATGANN
 A C G T G C T A T G C A T C A G C G A T A C T G A C G T C G A T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A T C A G T A G C C A T G C A G T C A G T G T A C A G C T G C T A G C T A A G C T T A C G C T G A A C G T C G T A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TAAGTGTTCT---
---CTGTTCCTGG
 A C G T G C T A T G C A T C A G C G A T A C T G A C G T C G A T A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

PB0172.1_Sox1_2/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TAAGTGTTCT--
CTATAATTGTTAGCG
 A C G T A C G T A C G T A C G T G C T A T G C A T C A G C G A T A C T G A C G T C G A T A T G C A C G T A C G T A C G T
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G