Information for 1-NRGDACABHVTGTNCY (Motif 1)

G T C A C T G A C A T G C T A G C G T A A T G C C G T A A C T G G C A T T G A C G C A T A T C G G C A T G A T C G T A C G A T C
Reverse Opposite:
C T A G C A T G C T A G C G T A T A G C C G T A A C T G C G T A T G A C G C A T A T C G G C A T G A T C G T A C G A C T C A G T
p-value:1e-225
log p-value:-5.195e+02
Information Content per bp:1.508
Number of Target Sequences with motif350.0
Percentage of Target Sequences with motif45.22%
Number of Background Sequences with motif2466.3
Percentage of Background Sequences with motif5.34%
Average Position of motif in Targets50.5 +/- 22.9bp
Average Position of motif in Background49.0 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:NRGDACABHVTGTNCY
NAGAACAGNCTGTNCT
 G T C A C T G A C A T G C T A G C G T A A T G C C G T A A C T G G C A T T G A C G C A T A T C G G C A T G A T C G T A C G A T C
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.97
Offset:0
Orientation:forward strand
Alignment:NRGDACABHVTGTNCY
NAGNACANNNTGTNCT
 G T C A C T G A C A T G C T A G C G T A A T G C C G T A A C T G G C A T T G A C G C A T A T C G G C A T G A T C G T A C G A T C
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.94
Offset:0
Orientation:forward strand
Alignment:NRGDACABHVTGTNCY
VAGRACAKWCTGTYC-
 G T C A C T G A C A T G C T A G C G T A A T G C C G T A A C T G G C A T T G A C G C A T A T C G G C A T G A T C G T A C G A T C
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:4
Score:0.94
Offset:0
Orientation:forward strand
Alignment:NRGDACABHVTGTNCY
VAGRACAKNCTGTBC-
 G T C A C T G A C A T G C T A G C G T A A T G C C G T A A C T G G C A T T G A C G C A T A T C G G C A T G A T C G T A C G A T C
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C A C G T

NR3C2/MA0727.1/Jaspar

Match Rank:5
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:NRGDACABHVTGTNCY-
GGGAACATTGTGTTCCC
 G T C A C T G A C A T G C T A G C G T A A T G C C G T A A C T G G C A T T G A C G C A T A T C G G C A T G A T C G T A C G A T C A C G T
C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

NR3C1/MA0113.3/Jaspar

Match Rank:6
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:NRGDACABHVTGTNCY-
NGGAACATNATGTACCC
 G T C A C T G A C A T G C T A G C G T A A T G C C G T A A C T G G C A T T G A C G C A T A T C G G C A T G A T C G T A C G A T C A C G T
C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:7
Score:0.91
Offset:0
Orientation:forward strand
Alignment:NRGDACABHVTGTNCY
AAGAACATWHTGTTC-
 G T C A C T G A C A T G C T A G C G T A A T G C C G T A A C T G G C A T T G A C G C A T A T C G G C A T G A T C G T A C G A T C
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C A C G T

Ar/MA0007.3/Jaspar

Match Rank:8
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:NRGDACABHVTGTNCY-
NGGTACACNGTGTTCCC
 G T C A C T G A C A T G C T A G C G T A A T G C C G T A A C T G G C A T T G A C G C A T A T C G G C A T G A T C G T A C G A T C A C G T
C T A G C T A G C T A G G C A T C G T A T A G C C T G A A G T C A T G C T C A G A G C T A T C G A C G T C G A T G A T C G A T C G A T C

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:forward strand
Alignment:NRGDACABHVTGTNCY
-AGGTCACCCTGACCT
 G T C A C T G A C A T G C T A G C G T A A T G C C G T A A C T G G C A T T G A C G C A T A T C G G C A T G A T C G T A C G A T C
A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:NRGDACABHVTGTNCY
NAGGTCACNNTGACC-
 G T C A C T G A C A T G C T A G C G T A A T G C C G T A A C T G G C A T T G A C G C A T A T C G G C A T G A T C G T A C G A T C
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T