Information for 10-WGGACACTGGAKA (Motif 11)

C G A T A C T G A T C G C G T A A T G C C G T A A T G C A G C T A T C G A C T G C G T A A C G T C G T A
Reverse Opposite:
A C G T G T A C A C G T A G T C A T G C C T G A A T C G A C G T A T C G A C G T A T G C A G T C C G A T
p-value:1e-9
log p-value:-2.152e+01
Information Content per bp:1.832
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 17.4bp
Average Position of motif in Background42.8 +/- 10.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:WGGACACTGGAKA-
--GWAAYHTGAKMC
 C G A T A C T G A T C G C G T A A T G C C G T A A T G C A G C T A T C G A C T G C G T A A C G T C G T A A C G T
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

PH0111.1_Nkx2-2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-WGGACACTGGAKA---
ATAACCACTTGAAAATT
 A C G T C G A T A C T G A T C G C G T A A T G C C G T A A T G C A G C T A T C G A C T G C G T A A C G T C G T A A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:WGGACACTGGAKA
-GAACAATGGN--
 C G A T A C T G A T C G C G T A A T G C C G T A A T G C A G C T A T C G A C T G C G T A A C G T C G T A
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---WGGACACTGGAKA-----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T C G A T A C T G A T C G C G T A A T G C C G T A A T G C A G C T A T C G A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--WGGACACTGGAKA-----
TCAGCACCATGGACAGCTCC
 A C G T A C G T C G A T A C T G A T C G C G T A A T G C C G T A A T G C A G C T A T C G A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:WGGACACTGGAKA
AAAACAATGG---
 C G A T A C T G A T C G C G T A A T G C C G T A A T G C A G C T A T C G A C T G C G T A A C G T C G T A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:WGGACACTGGAKA
-RAACAATGGN--
 C G A T A C T G A T C G C G T A A T G C C G T A A T G C A G C T A T C G A C T G C G T A A C G T C G T A
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:WGGACACTGGAKA
--AACAAAGG---
 C G A T A C T G A T C G C G T A A T G C C G T A A T G C A G C T A T C G A C T G C G T A A C G T C G T A
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

ETV2/MA0762.1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:WGGACACTGGAKA--
----AACCGGAAATA
 C G A T A C T G A T C G C G T A A T G C C G T A A T G C A G C T A T C G A C T G C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C G A T A G C T G A C A C T G A C T G C G T A G C T A T C G A A G C T C T G A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:WGGACACTGGAKA--
-----AATGGAAAAT
 C G A T A C T G A T C G C G T A A T G C C G T A A T G C A G C T A T C G A C T G C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T