Information for 7-CTCACWGACRSSGCAM (Motif 9)

A G T C A C G T A G T C C G T A G T A C C G A T A C T G C G T A A G T C C T G A A T G C A T G C A T C G A G T C C G T A G T A C
Reverse Opposite:
C A G T A C G T A C T G A T G C A T C G A T C G A G C T A C T G A C G T A G T C C G T A A C T G A C G T A C T G C G T A A C T G
p-value:1e-10
log p-value:-2.361e+01
Information Content per bp:1.863
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.7 +/- 22.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTCACWGACRSSGCAM
BTGABTGACAGS----
 A G T C A C G T A G T C C G T A G T A C C G A T A C T G C G T A A G T C C T G A A T G C A T G C A T C G A G T C C G T A G T A C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTCACWGACRSSGCAM
---CCAGACRSVB---
 A G T C A C G T A G T C C G T A G T A C C G A T A C T G C G T A A G T C C T G A A T G C A T G C A T C G A G T C C G T A G T A C
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTCACWGACRSSGCAM
NTGATTGACAGN----
 A G T C A C G T A G T C C G T A G T A C C G A T A C T G C G T A A G T C C T G A A T G C A T G C A T C G A G T C C G T A G T A C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T A C G T

Nfe2l2/MA0150.2/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTCACWGACRSSGCAM
CAGCATGACTCAGCA-
 A G T C A C G T A G T C C G T A G T A C C G A T A C T G C G T A A G T C C T G A A T G C A T G C A T C G A G T C C G T A G T A C
G T A C C T G A T A C G T G A C T C G A A C G T A C T G C G T A A T G C G C A T G A T C C T G A T A C G A T G C C G T A A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTCACWGACRSSGCAM
-TGAGTGACAGSC---
 A G T C A C G T A G T C C G T A G T A C C G A T A C T G C G T A A G T C C T G A A T G C A T G C A T C G A G T C C G T A G T A C
A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CTCACWGACRSSGCAM
-TCCCAGMCRAGCCCC
 A G T C A C G T A G T C C G T A G T A C C G A T A C T G C G T A A G T C C T G A A T G C A T G C A T C G A G T C C G T A G T A C
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CTCACWGACRSSGCAM
---CCAGACAG-----
 A G T C A C G T A G T C C G T A G T A C C G A T A C T G C G T A A G T C C T G A A T G C A T G C A T C G A G T C C G T A G T A C
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CTCACWGACRSSGCAM
----TTGACAG-----
 A G T C A C G T A G T C C G T A G T A C C G A T A C T G C G T A A G T C C T G A A T G C A T G C A T C G A G T C C G T A G T A C
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CTCACWGACRSSGCAM
AGGTCACGGAGAGGTCA-
 A C G T A C G T A G T C A C G T A G T C C G T A G T A C C G A T A C T G C G T A A G T C C T G A A T G C A T G C A T C G A G T C C G T A G T A C
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CTCACWGACRSSGCAM
AGCAACAGCCGCACC--
 A C G T A G T C A C G T A G T C C G T A G T A C C G A T A C T G C G T A A G T C C T G A A T G C A T G C A T C G A G T C C G T A G T A C
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T