Information for 2-CTTKGCAAGC (Motif 4)

A G T C C A G T A G C T A C T G A C T G A G T C C G T A C T G A C T A G A T G C
Reverse Opposite:
A T C G A G T C A G C T C G A T A C T G A G T C G T A C C T G A G T C A C T A G
p-value:1e-11
log p-value:-2.712e+01
Information Content per bp:1.780
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif6.16%
Number of Background Sequences with motif311.3
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets50.9 +/- 25.3bp
Average Position of motif in Background53.3 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTTKGCAAGC
CTTGGCAA--
 A G T C C A G T A G C T A C T G A C T G A G T C C G T A C T G A C T A G A T G C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTTKGCAAGC
NNTTGGCANN-
 A C G T A G T C C A G T A G C T A C T G A C T G A G T C C G T A C T G A C T A G A T G C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTTKGCAAGC
NTTGGCANN-
 A G T C C A G T A G C T A C T G A C T G A G T C C G T A C T G A C T A G A T G C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTTKGCAAGC
-TTGGCA---
 A G T C C A G T A G C T A C T G A C T G A G T C C G T A C T G A C T A G A T G C
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTTKGCAAGC
NATGTTGCAA--
 A C G T A C G T A G T C C A G T A G C T A C T G A C T G A G T C C G T A C T G A C T A G A T G C
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTTKGCAAGC--
TACCATAGCAACGGT
 A C G T A C G T A C G T A G T C C A G T A G C T A C T G A C T G A G T C C G T A C T G A C T A G A T G C A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0145.1_Mafb_2/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTTKGCAAGC-
ANATTTTTGCAANTN
 A C G T A C G T A C G T A C G T A G T C C A G T A G C T A C T G A C T G A G T C C G T A C T G A C T A G A T G C A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------CTTKGCAAGC------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C A G T A G C T A C T G A C T G A G T C C G T A C T G A C T A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTTKGCAAGC--
--TBGCACGCAA
 A G T C C A G T A G C T A C T G A C T G A G T C C G T A C T G A C T A G A T G C A C G T A C G T
A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTTKGCAAGC--
CCGCATAGCAACGGA
 A C G T A C G T A C G T A G T C C A G T A G C T A C T G A C T G A G T C C G T A C T G A C T A G A T G C A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A