Information for 19-AMACGTAKATRAWSAS (Motif 30)

C G T A G T A C C G T A A G T C A C T G A G C T C G T A A C G T C G T A A C G T C T A G C G T A C G A T A T C G C G T A A T C G
Reverse Opposite:
A T G C A C G T A T G C C G T A A C G T A G T C C G T A A C G T G T C A A C G T C T G A T A G C A C T G A C G T A C T G A C G T
p-value:1e-7
log p-value:-1.711e+01
Information Content per bp:1.844
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.3 +/- 27.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0015.1_Foxa2_1/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AMACGTAKATRAWSAS
AAAAAGTAAACAAAGAC
 A C G T C G T A G T A C C G T A A G T C A C T G A G C T C G T A A C G T C G T A A C G T C T A G C G T A C G A T A T C G C G T A A T C G
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AMACGTAKATRAWSAS
GCACGTAY--------
 C G T A G T A C C G T A A G T C A C T G A G C T C G T A A C G T C G T A A C G T C T A G C G T A C G A T A T C G C G T A A T C G
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxk1/MA0852.1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AMACGTAKATRAWSAS
AAAATGTAAACAAACAG
 A C G T C G T A G T A C C G T A A G T C A C T G A G C T C G T A A C G T C G T A A C G T C T A G C G T A C G A T A T C G C G T A A T C G
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0018.1_Foxk1_1/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AMACGTAKATRAWSAS
AAAATGTAAACAAACAG
 A C G T C G T A G T A C C G T A A G T C A C T G A G C T C G T A A C G T C G T A A C G T C T A G C G T A C G A T A T C G C G T A A T C G
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AMACGTAKATRAWSAS
GCACGTACCC------
 C G T A G T A C C G T A A G T C A C T G A G C T C G T A A C G T C G T A A C G T C T A G C G T A C G A T A T C G C G T A A T C G
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AMACGTAKATRAWSAS-----
----AAACATAATGAGGTTGC
 C G T A G T A C C G T A A G T C A C T G A G C T C G T A A C G T C G T A A C G T C T A G C G T A C G A T A T C G C G T A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AMACGTAKATRAWSAS
----WWATRTAAACAN
 C G T A G T A C C G T A A G T C A C T G A G C T C G T A A C G T C G T A A C G T C T A G C G T A C G A T A T C G C G T A A T C G
A C G T A C G T A C G T A C G T G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AMACGTAKATRAWSAS
BGCACGTA---------
 A C G T C G T A G T A C C G T A A G T C A C T G A G C T C G T A A C G T C G T A A C G T C T A G C G T A C G A T A T C G C G T A A T C G
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:9
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------AMACGTAKATRAWSAS
ANTTNTACATGTANTTN-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T A C C G T A A G T C A C T G A G C T C G T A A C G T C G T A A C G T C T A G C G T A C G A T A T C G C G T A A T C G
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T A C G T A C G T A C G T A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------AMACGTAKATRAWSAS
ANTNTTACATGTATNTA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T A C C G T A A G T C A C T G A G C T C G T A A C G T C G T A A C G T C T A G C G T A C G A T A T C G C G T A A T C G
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A A C G T A C G T A C G T A C G T A C G T