Information for 16-CAGGGCACAGTGATCA (Motif 27)

A G T C C G T A A C T G C T A G C T A G G T A C G T C A A G T C C G T A A C T G A G C T A C T G C G T A A C G T A G T C C T G A
Reverse Opposite:
A G C T C T A G C G T A A C G T A G T C C T G A G T A C A C G T A C T G C A G T A C T G A G T C A G T C A G T C A C G T A C T G
p-value:1e-7
log p-value:-1.711e+01
Information Content per bp:1.831
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 29.4bp
Average Position of motif in Background58.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:CAGGGCACAGTGATCA--
--------ATTGATTYND
 A G T C C G T A A C T G C T A G C T A G G T A C G T C A A G T C C G T A A C T G A G C T A C T G C G T A A C G T A G T C C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

CUX1/MA0754.1/Jaspar

Match Rank:2
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CAGGGCACAGTGATCA
------NTATCGATTA
 A G T C C G T A A C T G C T A G C T A G G T A C G T C A A G T C C G T A A C T G A G C T A C T G C G T A A C G T A G T C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAGGGCACAGTGATCA
NAGGTCACNNTGACC-
 A G T C C G T A A C T G C T A G C T A G G T A C G T C A A G T C C G T A A C T G A G C T A C T G C G T A A C G T A G T C C T G A
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAGGGCACAGTGATCA----
---CGAACAGTGCTCACTAT
 A G T C C G T A A C T G C T A G C T A G G T A C G T C A A G T C C G T A A C T G A G C T A C T G C G T A A C G T A G T C C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CAGGGCACAGTGATCA
------NTATYGATCH
 A G T C C G T A A C T G C T A G C T A G G T A C G T C A A G T C C G T A A C T G A G C T A C T G C G T A A C G T A G T C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

CUX2/MA0755.1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CAGGGCACAGTGATCA
------TTATCGATTA
 A G T C C G T A A C T G C T A G C T A G G T A C G T C A A G T C C G T A A C T G A G C T A C T G C G T A A C G T A G T C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A

PH0016.1_Cux1_1/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CAGGGCACAGTGATCA-----
----ACCGGTTGATCACCTGA
 A G T C C G T A A C T G C T A G C T A G G T A C G T C A A G T C C G T A A C T G A G C T A C T G C G T A A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A

ESR1/MA0112.3/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CAGGGCACAGTGATCA-
CAGGTCACCGTGACCTT
 A G T C C G T A A C T G C T A G C T A G G T A C G T C A A G T C C G T A A C T G A G C T A C T G C G T A A C G T A G T C C T G A A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

PH0017.1_Cux1_2/Jaspar

Match Rank:9
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:CAGGGCACAGTGATCA------
-------TAGTGATCATCATTA
 A G T C C G T A A C T G C T A G C T A G G T A C G T C A A G T C C G T A A C T G A G C T A C T G C G T A A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CAGGGCACAGTGATCA-
-------CNGTGATTTN
 A G T C C G T A A C T G C T A G C T A G G T A C G T C A A G T C C G T A A C T G A G C T A C T G C G T A A C G T A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G