Information for 11-CCGAGGCTGCCAG (Motif 24)

A G T C A G T C A C T G C G T A C T A G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G A C T G A G T C C G T A A C T G G T A C A G T C C G A T A G T C A C T G A C T G
p-value:1e-7
log p-value:-1.711e+01
Information Content per bp:1.939
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.4 +/- 25.4bp
Average Position of motif in Background45.7 +/- 13.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CCGAGGCTGCCAG-
------TTGCCAAG
 A G T C A G T C A C T G C G T A C T A G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CCGAGGCTGCCAG-
----VGCTGWCAVB
 A G T C A G T C A C T G C G T A C T A G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CCGAGGCTGCCAG-
-----CGTGCCAAG
 A G T C A G T C A C T G C G T A C T A G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CCGAGGCTGCCAG
-------TGCCAA
 A G T C A G T C A C T G C G T A C T A G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CCGAGGCTGCCAG--
------CTGCCCGCA
 A G T C A G T C A C T G C G T A C T A G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCGAGGCTGCCAG
--TWGTCTGV---
 A G T C A G T C A C T G C G T A C T A G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCGAGGCTGCCAG------
---NNNNTGCCAGTGATTG
 A G T C A G T C A C T G C G T A C T A G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CCGAGGCTGCCAG---
------ATGCCAGACN
 A G T C A G T C A C T G C G T A C T A G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCGAGGCTGCCAG--
---TGTCTGDCACCT
 A G T C A G T C A C T G C G T A C T A G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CCGAGGCTGCCAG--
------ATGCCAACC
 A G T C A G T C A C T G C G T A C T A G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C