Information for 9-CTTWYKGWTTYAT (Motif 22)

A G T C A C G T A C G T C G T A A G T C C A G T C T A G C G A T A C G T A C G T A G C T C G T A A G C T
Reverse Opposite:
C T G A A C G T C T G A C G T A C G T A G C T A A G T C G T C A C T A G G C A T G T C A C G T A A C T G
p-value:1e-7
log p-value:-1.760e+01
Information Content per bp:1.832
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif27.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets48.0 +/- 34.7bp
Average Position of motif in Background48.8 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:1
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:CTTWYKGWTTYAT----
-----TGATTTATGGCC
 A G T C A C G T A C G T C G T A A G T C C A G T C T A G C G A T A C G T A C G T A G C T C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:CTTWYKGWTTYAT---
-----TGATTTATGGC
 A G T C A C G T A C G T C G T A A G T C C A G T C T A G C G A T A C G T A C G T A G C T C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTTWYKGWTTYAT
RSTTTCRSTTTC--
 A C G T A G T C A C G T A C G T C G T A A G T C C A G T C T A G C G A T A C G T A C G T A G C T C G T A A G C T
T C G A A T G C A C G T A C G T A G C T A G T C C T G A A T G C G C A T G A C T A G C T G A T C A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CTTWYKGWTTYAT----
-----TGATTTATGGCC
 A G T C A C G T A C G T C G T A A G T C C A G T C T A G C G A T A C G T A C G T A G C T C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CTTWYKGWTTYAT----
----NTGATTTATGGCC
 A G T C A C G T A C G T C G T A A G T C C A G T C T A G C G A T A C G T A C G T A G C T C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CTTWYKGWTTYAT----
-----DGWTTTATGRCN
 A G T C A C G T A C G T C G T A A G T C C A G T C T A G C G A T A C G T A C G T A G C T C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTTWYKGWTTYAT
ACTTTCACTTTC--
 A C G T A G T C A C G T A C G T C G T A A G T C C A G T C T A G C G A T A C G T A C G T A G C T C G T A A G C T
C T G A A T G C G A C T C G A T A G C T A G T C C G T A A T G C A C G T A C G T G A C T A G T C A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTTWYKGWTTYAT-
NTTATTGATTTTTT
 A G T C A C G T A C G T C G T A A G T C C A G T C T A G C G A T A C G T A C G T A G C T C G T A A G C T A C G T
C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

IRF1/MA0050.2/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CTTWYKGWTTYAT---
TTTTACTTTCACTTTCACTTT
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A A G T C C A G T C T A G C G A T A C G T A C G T A G C T C G T A A G C T A C G T A C G T A C G T
G A C T A G C T A G C T A G C T C T G A A T G C C G A T A G C T A G C T A G T C C T G A A T G C G C A T G A C T G A C T A G T C C G T A A G T C G A C T G C A T G A C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:CTTWYKGWTTYAT----
-------TTTTATTRGN
 A G T C A C G T A C G T C G T A A G T C C A G T C T A G C G A T A C G T A C G T A G C T C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A