Information for 5-GAGTGTTTCA (Motif 21)

C T A G C T G A C A T G C G A T A T C G A G C T C G A T G A C T A T G C G T C A
Reverse Opposite:
C A G T A T C G C T G A G C T A T C G A A T G C G C T A G T A C A G C T A G T C
p-value:1e-7
log p-value:-1.799e+01
Information Content per bp:1.730
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif6.16%
Number of Background Sequences with motif556.6
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets47.1 +/- 26.2bp
Average Position of motif in Background48.8 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GAGTGTTTCA
TTRAGTGSYK--
 A C G T A C G T C T A G C T G A C A T G C G A T A T C G A G C T C G A T G A C T A T G C G T C A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGTTTCA
TTAAGTGCTT--
 A C G T A C G T C T A G C T G A C A T G C G A T A T C G A G C T C G A T G A C T A T G C G T C A
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAGTGTTTCA
-ATTGTTA--
 C T A G C T G A C A T G C G A T A T C G A G C T C G A T G A C T A T G C G T C A
A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGTTTCA
TTGAGTGSTT--
 A C G T A C G T C T A G C T G A C A T G C G A T A T C G A G C T C G A T G A C T A T G C G T C A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGTTTCA
CTTGAGTGGCT--
 A C G T A C G T A C G T C T A G C T G A C A T G C G A T A T C G A G C T C G A T G A C T A T G C G T C A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAGTGTTTCA
-ATTGTT---
 C T A G C T G A C A T G C G A T A T C G A G C T C G A T G A C T A T G C G T C A
A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGTTTCA
CTYRAGTGSY---
 A C G T A C G T A C G T C T A G C T G A C A T G C G A T A T C G A G C T C G A T G A C T A T G C G T C A
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAGTGTTTCA
CGTGGGTGGTCC-
 A C G T A C G T A C G T C T A G C T G A C A T G C G A T A T C G A G C T C G A T G A C T A T G C G T C A
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGTGTTTCA--
-AATGTATCAAT
 C T A G C T G A C A T G C G A T A T C G A G C T C G A T G A C T A T G C G T C A A C G T A C G T
A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGTGTTTCA-
-NATGTTGCAA
 C T A G C T G A C A T G C G A T A T C G A G C T C G A T G A C T A T G C G T C A A C G T
A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A