Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer | 1e-172 | -3.969e+02 | 0.0000 | 424.0 | 54.78% | 5803.5 | 12.57% | motif file (matrix) |
svg |
2 |
| ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer | 1e-99 | -2.283e+02 | 0.0000 | 129.0 | 16.67% | 575.1 | 1.25% | motif file (matrix) |
svg |
3 |
| GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer | 1e-92 | -2.124e+02 | 0.0000 | 125.0 | 16.15% | 600.1 | 1.30% | motif file (matrix) |
svg |
4 |
| PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer | 1e-74 | -1.712e+02 | 0.0000 | 110.0 | 14.21% | 612.6 | 1.33% | motif file (matrix) |
svg |
5 |
| GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer | 1e-67 | -1.561e+02 | 0.0000 | 83.0 | 10.72% | 323.4 | 0.70% | motif file (matrix) |
svg |
6 |
| AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-66 | -1.529e+02 | 0.0000 | 401.0 | 51.81% | 10663.6 | 23.09% | motif file (matrix) |
svg |
7 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-9 | -2.248e+01 | 0.0000 | 238.0 | 30.75% | 9723.1 | 21.06% | motif file (matrix) |
svg |
8 |
| ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer | 1e-9 | -2.120e+01 | 0.0000 | 68.0 | 8.79% | 1785.1 | 3.87% | motif file (matrix) |
svg |
9 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-4 | -1.123e+01 | 0.0005 | 71.0 | 9.17% | 2493.2 | 5.40% | motif file (matrix) |
svg |
10 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-4 | -1.027e+01 | 0.0013 | 218.0 | 28.17% | 10164.9 | 22.01% | motif file (matrix) |
svg |
11 |
| Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.013e+01 | 0.0013 | 107.0 | 13.82% | 4334.1 | 9.39% | motif file (matrix) |
svg |
12 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-4 | -9.678e+00 | 0.0019 | 60.0 | 7.75% | 2106.4 | 4.56% | motif file (matrix) |
svg |
13 |
| ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer | 1e-4 | -9.458e+00 | 0.0022 | 20.0 | 2.58% | 439.2 | 0.95% | motif file (matrix) |
svg |
14 |
| HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer | 1e-4 | -9.386e+00 | 0.0022 | 60.0 | 7.75% | 2129.1 | 4.61% | motif file (matrix) |
svg |
15 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-3 | -8.370e+00 | 0.0056 | 53.0 | 6.85% | 1886.2 | 4.08% | motif file (matrix) |
svg |
16 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-3 | -8.278e+00 | 0.0058 | 64.0 | 8.27% | 2412.0 | 5.22% | motif file (matrix) |
svg |
17 |
| ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -8.087e+00 | 0.0066 | 26.0 | 3.36% | 722.2 | 1.56% | motif file (matrix) |
svg |
18 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-3 | -8.052e+00 | 0.0066 | 65.0 | 8.40% | 2481.4 | 5.37% | motif file (matrix) |
svg |
19 |
| AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.946e+00 | 0.0068 | 35.0 | 4.52% | 1107.3 | 2.40% | motif file (matrix) |
svg |
20 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.859e+00 | 0.0070 | 53.0 | 6.85% | 1928.5 | 4.18% | motif file (matrix) |
svg |
21 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-3 | -7.754e+00 | 0.0074 | 93.0 | 12.02% | 3901.6 | 8.45% | motif file (matrix) |
svg |
22 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-3 | -7.733e+00 | 0.0074 | 147.0 | 18.99% | 6725.3 | 14.56% | motif file (matrix) |
svg |
23 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-3 | -7.658e+00 | 0.0075 | 39.0 | 5.04% | 1302.9 | 2.82% | motif file (matrix) |
svg |
24 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-3 | -7.371e+00 | 0.0095 | 35.0 | 4.52% | 1144.7 | 2.48% | motif file (matrix) |
svg |
25 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-3 | -6.931e+00 | 0.0142 | 44.0 | 5.68% | 1585.7 | 3.43% | motif file (matrix) |
svg |
26 |
| HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer | 1e-2 | -6.654e+00 | 0.0180 | 57.0 | 7.36% | 2230.6 | 4.83% | motif file (matrix) |
svg |
27 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-2 | -6.255e+00 | 0.0259 | 50.0 | 6.46% | 1930.3 | 4.18% | motif file (matrix) |
svg |
28 |
| NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -6.217e+00 | 0.0259 | 6.0 | 0.78% | 76.5 | 0.17% | motif file (matrix) |
svg |
29 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-2 | -6.191e+00 | 0.0259 | 60.0 | 7.75% | 2426.5 | 5.25% | motif file (matrix) |
svg |
30 |
| AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-2 | -6.142e+00 | 0.0261 | 41.0 | 5.30% | 1511.5 | 3.27% | motif file (matrix) |
svg |
31 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.796e+00 | 0.0357 | 77.0 | 9.95% | 3333.0 | 7.22% | motif file (matrix) |
svg |
32 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-2 | -5.739e+00 | 0.0366 | 26.0 | 3.36% | 855.7 | 1.85% | motif file (matrix) |
svg |
33 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-2 | -5.575e+00 | 0.0418 | 43.0 | 5.56% | 1658.4 | 3.59% | motif file (matrix) |
svg |
34 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-2 | -5.573e+00 | 0.0418 | 123.0 | 15.89% | 5797.1 | 12.55% | motif file (matrix) |
svg |
35 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -5.566e+00 | 0.0418 | 31.0 | 4.01% | 1093.7 | 2.37% | motif file (matrix) |
svg |
36 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.335e+00 | 0.0487 | 20.0 | 2.58% | 619.7 | 1.34% | motif file (matrix) |
svg |
37 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-2 | -5.078e+00 | 0.0613 | 85.0 | 10.98% | 3853.1 | 8.34% | motif file (matrix) |
svg |
38 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-2 | -4.953e+00 | 0.0677 | 51.0 | 6.59% | 2118.1 | 4.59% | motif file (matrix) |
svg |
39 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -4.800e+00 | 0.0768 | 100.0 | 12.92% | 4697.3 | 10.17% | motif file (matrix) |
svg |
40 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -4.745e+00 | 0.0792 | 67.0 | 8.66% | 2963.0 | 6.42% | motif file (matrix) |
svg |
41 |
| GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.663e+00 | 0.0838 | 10.0 | 1.29% | 245.0 | 0.53% | motif file (matrix) |
svg |