Information for 5-AACTGGGACA (Motif 9)

C G T A G C T A A T G C C A G T C T A G C T A G C T A G T G C A T A G C C G T A
Reverse Opposite:
A C G T A T C G A C G T G A T C A G T C G A T C G T C A T A C G C G A T G C A T
p-value:1e-12
log p-value:-2.802e+01
Information Content per bp:1.651
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.10%
Number of Background Sequences with motif212.7
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets40.5 +/- 26.0bp
Average Position of motif in Background48.2 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:AACTGGGACA-
-CCAGGAACAG
 C G T A G C T A A T G C C A G T C T A G C T A G C T A G T G C A T A G C C G T A A C G T
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AACTGGGACA
AAYTAGGTCA
 C G T A G C T A A T G C C A G T C T A G C T A G C T A G T G C A T A G C C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AACTGGGACA-
TATAAGTAGGTCAA
 A C G T A C G T A C G T C G T A G C T A A T G C C A G T C T A G C T A G C T A G T G C A T A G C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AACTGGGACA---
---TGGAACAGMA
 C G T A G C T A A T G C C A G T C T A G C T A G C T A G T G C A T A G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

NFATC2/MA0152.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AACTGGGACA
---TGGAAAA
 C G T A G C T A A T G C C A G T C T A G C T A G C T A G T G C A T A G C C G T A
A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AACTGGGACA
ATCAAGGTCA
 C G T A G C T A A T G C C A G T C T A G C T A G C T A G T G C A T A G C C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AACTGGGACA----
----GGAACAAAGR
 C G T A G C T A A T G C C A G T C T A G C T A G C T A G T G C A T A G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AACTGGGACA
----AGGTCA
 C G T A G C T A A T G C C A G T C T A G C T A G C T A G T G C A T A G C C G T A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

PB0096.1_Zfp187_1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AACTGGGACA---
TTATTAGTACATAN
 A C G T C G T A G C T A A T G C C A G T C T A G C T A G C T A G T G C A T A G C C G T A A C G T A C G T A C G T
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A

PB0157.1_Rara_2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AACTGGGACA----
AGAGCGGGGTCAAGTA
 A C G T A C G T C G T A G C T A A T G C C A G T C T A G C T A G C T A G T G C A T A G C C G T A A C G T A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A