Information for 3-GAAGGGACTGTTC (Motif 3)

C T A G T G C A C T G A C A T G C T A G T A C G C G T A T G A C G C A T A T C G A C G T C G A T A G T C
Reverse Opposite:
T C A G G C T A C G T A A T G C C G T A A C T G G C A T A T G C A G T C G T A C G A C T A C G T G A T C
p-value:1e-34
log p-value:-7.840e+01
Information Content per bp:1.643
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif9.69%
Number of Background Sequences with motif734.9
Percentage of Background Sequences with motif1.59%
Average Position of motif in Targets49.6 +/- 25.7bp
Average Position of motif in Background50.6 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAAGGGACTGTTC
VAGRACAKNCTGTBC
 A C G T A C G T C T A G T G C A C T G A C A T G C T A G T A C G C G T A T G A C G C A T A T C G A C G T C G A T A G T C
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAAGGGACTGTTC
VAGRACAKWCTGTYC
 A C G T A C G T C T A G T G C A C T G A C A T G C T A G T A C G C G T A T G A C G C A T A T C G A C G T C G A T A G T C
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAAGGGACTGTTC-
NAGNACANNNTGTNCT
 A C G T A C G T C T A G T G C A C T G A C A T G C T A G T A C G C G T A T G A C G C A T A T C G A C G T C G A T A G T C A C G T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAAGGGACTGTTC
AAGAACATWHTGTTC
 A C G T A C G T C T A G T G C A C T G A C A T G C T A G T A C G C G T A T G A C G C A T A T C G A C G T C G A T A G T C
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:GAAGGGACTGTTC----
-------CTGTTCCTGG
 C T A G T G C A C T G A C A T G C T A G T A C G C G T A T G A C G C A T A T C G A C G T C G A T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGGACTGTTC-
NAGAACAGNCTGTNCT
 A C G T A C G T C T A G T G C A C T G A C A T G C T A G T A C G C G T A T G A C G C A T A T C G A C G T C G A T A G T C A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

NR3C2/MA0727.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAAGGGACTGTTC--
GGGAACACAATGTTCCC
 A C G T A C G T C T A G T G C A C T G A C A T G C T A G T A C G C G T A T G A C G C A T A T C G A C G T C G A T A G T C A C G T A C G T
C A T G C T A G C A T G C G T A T G C A A T G C C T G A G A T C C G T A C T G A G A C T A T C G G A C T G C A T G A T C A G T C G T A C

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAAGGGACTGTTC-----
-AATCAATTGTTCCGCTA
 C T A G T G C A C T G A C A T G C T A G T A C G C G T A T G A C G C A T A T C G A C G T C G A T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAAGGGACTGTTC----
-AANTTATTGTTCTNNA
 C T A G T G C A C T G A C A T G C T A G T A C G C G T A T G A C G C A T A T C G A C G T C G A T A G T C A C G T A C G T A C G T A C G T
A C G T C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAAGGGACTGTTC----
GGAAAAATTGTTAGGAA
 C T A G T G C A C T G A C A T G C T A G T A C G C G T A T G A C G C A T A T C G A C G T C G A T A G T C A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A