Information for 5-CRTTGTGCTT (Motif 6)

A G T C T C G A A C G T C G A T A C T G A C G T A C T G G T A C A G C T A C G T
Reverse Opposite:
T G C A C T G A C A T G G T A C C G T A T G A C C G T A T G C A A G C T C T A G
p-value:1e-13
log p-value:-3.005e+01
Information Content per bp:1.764
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.96%
Number of Background Sequences with motif517.0
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets52.3 +/- 28.0bp
Average Position of motif in Background50.0 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CRTTGTGCTT
CCWTTGTYYB-
 A C G T A G T C T C G A A C G T C G A T A C T G A C G T A C T G G T A C A G C T A C G T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CRTTGTGCTT
CCATTGTTTT-
 A C G T A G T C T C G A A C G T C G A T A C T G A C G T A C T G G T A C A G C T A C G T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CRTTGTGCTT
CTTTGT----
 A G T C T C G A A C G T C G A T A C T G A C G T A C T G G T A C A G C T A C G T
A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CRTTGTGCTT
YCTTTGTTCC-
 A C G T A G T C T C G A A C G T C G A T A C T G A C G T A C T G G T A C A G C T A C G T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CRTTGTGCTT
CCATTGTTNY-
 A C G T A G T C T C G A A C G T C G A T A C T G A C G T A C T G G T A C A G C T A C G T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CRTTGTGCTT
CCATTGTTYB-
 A C G T A G T C T C G A A C G T C G A T A C T G A C G T A C T G G T A C A G C T A C G T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CRTTGTGCTT--
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A C G T A G T C T C G A A C G T C G A T A C T G A C G T A C T G G T A C A G C T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CRTTGTGCTT
NCCATTGTTC--
 A C G T A C G T A G T C T C G A A C G T C G A T A C T G A C G T A C T G G T A C A G C T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CRTTGTGCTT
CTCATTGTC---
 A C G T A C G T A G T C T C G A A C G T C G A T A C T G A C G T A C T G G T A C A G C T A C G T
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CRTTGTGCTT
NCCATTGTTY--
 A C G T A C G T A G T C T C G A A C G T C G A T A C T G A C G T A C T G G T A C A G C T A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T