Information for 2-AGVAGGVACTGTKCYB (Motif 2)

C T G A C T A G T G C A C T G A A C T G T C A G T A G C G C T A T G A C G C A T T A C G G C A T A C T G G A T C G A C T A G C T
Reverse Opposite:
T C G A C T G A C T A G T G A C C G T A A T G C C G T A A C T G C G A T A T C G A G T C T G A C G A C T A C G T G A T C G A C T
p-value:1e-44
log p-value:-1.022e+02
Information Content per bp:1.545
Number of Target Sequences with motif106.0
Percentage of Target Sequences with motif13.84%
Number of Background Sequences with motif1156.7
Percentage of Background Sequences with motif2.52%
Average Position of motif in Targets47.1 +/- 21.8bp
Average Position of motif in Background50.0 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGVAGGVACTGTKCYB
VAGRACAKNCTGTBC--
 A C G T C T G A C T A G T G C A C T G A A C T G T C A G T A G C G C T A T G A C G C A T T A C G G C A T A C T G G A T C G A C T A G C T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C A C G T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGVAGGVACTGTKCYB
NAGNACANNNTGTNCT-
 A C G T C T G A C T A G T G C A C T G A A C T G T C A G T A G C G C T A T G A C G C A T T A C G G C A T A C T G G A T C G A C T A G C T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGVAGGVACTGTKCYB
AGNACAGNCTGTTCTN
 C T G A C T A G T G C A C T G A A C T G T C A G T A G C G C T A T G A C G C A T T A C G G C A T A C T G G A T C G A C T A G C T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGVAGGVACTGTKCYB
VAGRACAKWCTGTYC--
 A C G T C T G A C T A G T G C A C T G A A C T G T C A G T A G C G C T A T G A C G C A T T A C G G C A T A C T G G A T C G A C T A G C T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGVAGGVACTGTKCYB
AAGAACATWHTGTTC--
 A C G T C T G A C T A G T G C A C T G A A C T G T C A G T A G C G C T A T G A C G C A T T A C G G C A T A C T G G A T C G A C T A G C T
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.65
Offset:8
Orientation:reverse strand
Alignment:AGVAGGVACTGTKCYB--
--------CTGTTCCTGG
 C T G A C T A G T G C A C T G A A C T G T C A G T A G C G C T A T G A C G C A T T A C G G C A T A C T G G A T C G A C T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

NR3C2/MA0727.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGVAGGVACTGTKCYB
GGGAACACAATGTTCCC
 A C G T C T G A C T A G T G C A C T G A A C T G T C A G T A G C G C T A T G A C G C A T T A C G G C A T A C T G G A T C G A C T A G C T
C A T G C T A G C A T G C G T A T G C A A T G C C T G A G A T C C G T A C T G A G A C T A T C G G A C T G C A T G A T C A G T C G T A C

Ar/MA0007.3/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGVAGGVACTGTKCYB
NGGTACACNGTGTTCCC
 A C G T C T G A C T A G T G C A C T G A A C T G T C A G T A G C G C T A T G A C G C A T T A C G G C A T A C T G G A T C G A C T A G C T
C T A G C T A G C T A G G C A T C G T A T A G C C T G A A G T C A T G C T C A G A G C T A T C G A C G T C G A T G A T C G A T C G A T C

NR3C1/MA0113.3/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGVAGGVACTGTKCYB
GGGTACATAATGTTCCC
 A C G T C T G A C T A G T G C A C T G A A C T G T C A G T A G C G C T A T G A C G C A T T A C G G C A T A C T G G A T C G A C T A G C T
C T A G C T A G C T A G C G A T C G T A A T G C C T G A G A C T C G T A C T G A G A C T A T C G A C G T G C A T G A T C G A T C G T A C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGVAGGVACTGTKCYB
AGGVNCCTTTGT----
 C T G A C T A G T G C A C T G A A C T G T C A G T A G C G C T A T G A C G C A T T A C G G C A T A C T G G A T C G A C T A G C T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T