Information for 7-GGCAGTKCCCAKA (Motif 11)

A C T G T A C G A G T C C T G A C A T G A C G T A C G T A G T C A G T C A G T C C G T A C A G T G C T A
Reverse Opposite:
C A G T G T C A A C G T A C T G A C T G C T A G T G C A G T C A G A T C A G C T A C T G A T G C A G T C
p-value:1e-8
log p-value:-1.983e+01
Information Content per bp:1.770
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif82.7
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets44.8 +/- 26.4bp
Average Position of motif in Background47.9 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGCAGTKCCCAKA---
GGGTGTGCCCAAAAGG
 A C T G T A C G A G T C C T G A C A T G A C G T A C G T A G T C A G T C A G T C C G T A C A G T G C T A A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GGCAGTKCCCAKA--
-----TGCCCAGNHW
 A C T G T A C G A G T C C T G A C A T G A C G T A C G T A G T C A G T C A G T C C G T A C A G T G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGCAGTKCCCAKA
---HTTTCCCASG
 A C T G T A C G A G T C C T G A C A T G A C G T A C G T A G T C A G T C A G T C C G T A C A G T G C T A
A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGCAGTKCCCAKA
GGAAATTCCC---
 A C T G T A C G A G T C C T G A C A T G A C G T A C G T A G T C A G T C A G T C C G T A C A G T G C T A
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGCAGTKCCCAKA
---ATTTTCCATT
 A C T G T A C G A G T C C T G A C A T G A C G T A C G T A G T C A G T C A G T C C G T A C A G T G C T A
A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGCAGTKCCCAKA
NGGGGATTTCCC---
 A C G T A C G T A C T G T A C G A G T C C T G A C A T G A C G T A C G T A G T C A G T C A G T C C G T A C A G T G C T A
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGCAGTKCCCAKA
---ATTTTCCATT
 A C T G T A C G A G T C C T G A C A T G A C G T A C G T A G T C A G T C A G T C C G T A C A G T G C T A
A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

Myb/MA0100.2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGTKCCCAKA
TGGCAGTTGN----
 A C G T A C T G T A C G A G T C C T G A C A T G A C G T A C G T A G T C A G T C A G T C C G T A C A G T G C T A
C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGCAGTKCCCAKA-----
---ATTTCCCAGVAKSCY
 A C T G T A C G A G T C C T G A C A T G A C G T A C G T A G T C A G T C A G T C C G T A C A G T G C T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGCAGTKCCCAKA
AGGTCANTGACCTN-
 A C G T A C G T A C T G T A C G A G T C C T G A C A T G A C G T A C G T A G T C A G T C A G T C C G T A C A G T G C T A
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T