Information for 13-ATAAAACCCACAA (Motif 20)

C G T A A C G T C G T A C G T A C G T A C T G A A G T C T G A C A G T C C G T A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C G T A C T G A C T G A C T G A G C T A C G T A C G T A C G T C G T A A C G T
p-value:1e-9
log p-value:-2.162e+01
Information Content per bp:1.946
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets22.2 +/- 15.5bp
Average Position of motif in Background42.7 +/- 13.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:ATAAAACCCACAA--
----AAACCACAGAN
 C G T A A C G T C G T A C G T A C G T A C T G A A G T C T G A C A G T C C G T A A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------ATAAAACCCACAA
CTACCAATAAAATTCT---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C T G A A G T C T G A C A G T C C G T A A G T C C G T A C G T A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:ATAAAACCCACAA-
----AAACCACANN
 C G T A A C G T C G T A C G T A C G T A C T G A A G T C T G A C A G T C C G T A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACCCACAA
CCAATAAAAA------
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C T G A A G T C T G A C A G T C C G T A A G T C C G T A C G T A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACCCACAA
GTCATAAAAN------
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C T G A A G T C T G A C A G T C C G T A A G T C C G T A C G T A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ATAAAACCCACAA
NCYAATAAAA-------
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C T G A A G T C T G A C A G T C C G T A A G T C C G T A C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ATAAAACCCACAA
NGYCATAAAWCH-----
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C T G A A G T C T G A C A G T C C G T A A G T C C G T A C G T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATAAAACCCACAA--
---NWAACCACADNN
 C G T A A C G T C G T A C G T A C G T A C T G A A G T C T G A C A G T C C G T A A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACCCACAA
CCAATAAAAC------
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C T G A A G T C T G A C A G T C C G T A A G T C C G T A C G T A
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACCCACAA
GCAATAAAA-------
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C T G A A G T C T G A C A G T C C G T A A G T C C G T A C G T A
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T